Gene Sfri_1982 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1982 
Symbol 
ID4278894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp2348489 
End bp2349130 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content44% 
IMG OID638134769 
Productperoxidase 
Protein accessionYP_750666 
Protein GI114563153 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0450] Peroxiredoxin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGACT CTATTGTTTC TTTCCCGCAA TTAAACCGCC CAGCCCCTGC GTTTAATGCA 
AAAACAACAC ATGGCATGCG TTCACTTACA GATTATAAAG GCAAGTGGCT AGTGTTGTTC 
TCTCATCCTG CAGATTTTAC CCCTGTTTGT ACTACTGAGT TTATTGGGTT TGCTCAACGA 
GCTGAAGAAT TTGCTCACAT CAACACAGAA TTATTAGGTT TATCCATCGA CAGTGTTCAT 
TCTCACATCG CTTGGGTACG TAACATTGAA GAAAACTTTG GCGTTGACAT TACCTTCCCG 
ATTATTTCCG ACTTATCAAT GGAAGTGGCT AAAGCTTACG GCATGATCCA ACCCGGTGCG 
AGCGACACAT CTGCCGTTCG CGCAACCTTT ATTATCGATC CCGAAGGTAT GTTACGAGCC 
ATGGTGTATT ATCCAATGAG TAATGGTCGT TCTATAGATG AATTTGTTCG ATTAGTAAAA 
GCGCTGCAAA CCAGTGATGC CAATGGCGTT GCGACTCCAG AAAACTGGCA ACCTGGCGAT 
GACGTTATAG TGCCACCGCC AGCAACTACT GCTGACGCTA AAGCACGATT ATCCCAAGGC 
TACGATTACG TAGATTGGTA TTTCAGTAAG AAGTCTCTTT AA
 
Protein sequence
MTDSIVSFPQ LNRPAPAFNA KTTHGMRSLT DYKGKWLVLF SHPADFTPVC TTEFIGFAQR 
AEEFAHINTE LLGLSIDSVH SHIAWVRNIE ENFGVDITFP IISDLSMEVA KAYGMIQPGA 
SDTSAVRATF IIDPEGMLRA MVYYPMSNGR SIDEFVRLVK ALQTSDANGV ATPENWQPGD 
DVIVPPPATT ADAKARLSQG YDYVDWYFSK KSL