| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1946 |
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| Symbol | |
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| ID | 4278858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2309678 |
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| End bp | 2311360 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638134733 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_750630 |
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| Protein GI | 114563117 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.110511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTAATG AATACGATTA TATTATTGTC GGTGCCGGTA GCGCAGGTTG TGTATTAGCC
AACCGCTTAA CGGAAAATCC AGACAATAAA GTCCTGATAC TTGAAACCGG TGGTAGCGAC
AAGAGCATTT TTATCCAAAT GCCAACCGCC CTTTCAATTC CCATGAATAC TAAAAAGTAT
GCATGGCAGT TTGAAACCGA AGCCGAACCA CATTTGGACA ATCGCCGTAT GCATTGCCCG
CGTGGCAAAG TGTTAGGCGG TTCATCATCA ATCAATGGCA TGGTCTACGT ACGTGGTCAT
GCGCGTGATT TTGATGAGTG GCAACAACAA GGTGCAAAAG ACTGGGATTA TGCTCACTGT
CTGCCTTACT TTAAGAAAGC TGAAACATGG TCTTTTGGCG GTAATGTTTA TCGCGGTGAT
AAAGGCCCAT TAGCGGTTAA TAACGGTAAT GAAATGAAAA ACCCGTTATA TCAAGCTTTT
GTTGATGCAG GTGTCGATGC CGGCTACCTA GCCACTGATG ATTACAATGC CAGTCAGCAA
GAAGGCTTTG GCCCAATGCA CATGACCGTT AAAAACGGCG TACGTTGGTC TACGGCAAAT
GCGTACCTTC GCCCTGCAAT GAAACGCCCT AATTTAACCG TGGTCACTCA TGCGCTTGTG
CATAAAGTGA TTATGCAAGG TAAAACGGCT GTCGGCGTTC GTTACGAACG TAAAGGCGAG
TTGATTGATG TTAACTGCAA TAAAGAAGTG ATTTTATCTG CAGGTTCAAT TGGTTCACCG
CATATTTTAC AACTGTCGGG TATTGGTGAT TCAAGCACAT TAGCTAACGC TGGAATTGAG
CAAGTACATC AATTACCTGG TGTTGGTCAG AATCTGCAAG ACCACTTAGA GTTTTACTTC
CAATTTAAGT GCTTAAAGCC GATATCGCTT AATGGCAAAA TTGATCCGTT AAACAAATTG
TTTATTGGTG CTCGCTGGAT TTTAAATAAG TCAGGTTTGG GTGCAACTAA CCATTTTGAA
TCGTGTGGTT TTATCCGCTC AAAAGCGGGC TTAGAGTGGC CTGATTTACA GTACCACTTC
TTACCTGCTG CCATGCGTTA CGACGGAAAA GAAGCGTTTG CTGGCCATGG TTTCCAAGTT
CATATTGGCC ACAATAAACC TAAAAGCCGT GGCGCAGTAA CGGTTGTATC AAATGATGCC
AAGGTTGCCC CACAAATTCA GTTCAATTAT TTATCGCATC AAGATGATAT TGAAGGCTTT
AGAGCGTGTG TTCGTTTAAC CCGTGAAATT ATTAATCAAC CGGGTTTAGA TGAATATCGT
GGTGAAGAAA TTCAACCAGG CTTAGCAATA CAGACAGATG AAGAAATAGA CCGTTTTGTT
AGAAGCTCAG TAGAAAGCGC TTACCACCCT TCTTGCTCAT GCAAAATGGG TGAAGATGAG
ATGGCAGTTG TCGACTCGGA AACAAAAGTA CATGGTATTA ATGGTTTACG AGTAGTTGAT
TCGTCAATTT TTCCGACCAT TCCAAATGGC AATTTGAACT CCCCGACGAT AATGGTCGCC
GAGCGCGCTG CCGATATTAT TTTAGGCAAC AAACCTCTTG CGCCAAGTTT GGCAAAAGTG
ACTATTGCTA AGCAATGGCA AACATCACAA CGATTACAAG CGCCTAAACG ACAAATTGAT
TAA
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| Protein sequence | MSNEYDYIIV GAGSAGCVLA NRLTENPDNK VLILETGGSD KSIFIQMPTA LSIPMNTKKY
AWQFETEAEP HLDNRRMHCP RGKVLGGSSS INGMVYVRGH ARDFDEWQQQ GAKDWDYAHC
LPYFKKAETW SFGGNVYRGD KGPLAVNNGN EMKNPLYQAF VDAGVDAGYL ATDDYNASQQ
EGFGPMHMTV KNGVRWSTAN AYLRPAMKRP NLTVVTHALV HKVIMQGKTA VGVRYERKGE
LIDVNCNKEV ILSAGSIGSP HILQLSGIGD SSTLANAGIE QVHQLPGVGQ NLQDHLEFYF
QFKCLKPISL NGKIDPLNKL FIGARWILNK SGLGATNHFE SCGFIRSKAG LEWPDLQYHF
LPAAMRYDGK EAFAGHGFQV HIGHNKPKSR GAVTVVSNDA KVAPQIQFNY LSHQDDIEGF
RACVRLTREI INQPGLDEYR GEEIQPGLAI QTDEEIDRFV RSSVESAYHP SCSCKMGEDE
MAVVDSETKV HGINGLRVVD SSIFPTIPNG NLNSPTIMVA ERAADIILGN KPLAPSLAKV
TIAKQWQTSQ RLQAPKRQID
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