Gene Sfri_1944 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1944 
Symbol 
ID4278856 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp2307490 
End bp2308197 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content43% 
IMG OID638134731 
Producthypothetical protein 
Protein accessionYP_750628 
Protein GI114563115 
COG category 
COG ID 
TIGRFAM ID[TIGR02001] conserved hypothetical protein, proteobacterial 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0137324 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATACAA CAATGAAAAA GTTAGCCCTA CTAAGCTTAT TTGCTTTACC GACTTCAGTA 
ATGGCTGGTG AGTTAAGCAC AACTGTTAAT GCAACCTCTG ACTATACCTT TAATGGTGTT 
AGCCAAACAG ATAATGACCC TGCATTACAG GCTAGCCTAG ACTACGCAGC CGATGACGGT 
TGGTATGTAG GTGCTTGGGC ATCTAATGTT GATTTTGGAA GCGGTGATGA TACTTGGTTA 
GAACTTGATT TTTACGCAGG TAAATATTTT GAACTAACCG ACAGAGTGTC TGTTGATGCA 
GGTATTGCAT ATTACACATA CCATGGTGAT GATGCCTCTG ATGAGTATTA CTACCCAGAG 
CTTTACACCA AGTTTGGCTA TGCTTCATCG CTTGGTCAGA GTGAATTGAA CTTTTGGTAT 
TCATGGGATT ACTTTGGTGT TGATGCCGAT CATTACATCA TGATGGCAGC TCATACCTTT 
ACTGTCGCAG AAGGTCACGA CATCCGTGTT AGCTTTGACC GTTCAACGTC ACTAGACGAA 
GACAAATGGG CATGGGACGG CGACAAGTCT TACAACCATT ACCGTGCAGA GTATATGACA 
AGCTGGGAAG GTTTTGATTT CAACGTTGCC GTTGAAGATA CCAGTATGGA CACTGATACT 
AGCGATACCC GCGCAGTCTT ATCGGTATCA CGTACTTTCA GTCTATAA
 
Protein sequence
MNTTMKKLAL LSLFALPTSV MAGELSTTVN ATSDYTFNGV SQTDNDPALQ ASLDYAADDG 
WYVGAWASNV DFGSGDDTWL ELDFYAGKYF ELTDRVSVDA GIAYYTYHGD DASDEYYYPE 
LYTKFGYASS LGQSELNFWY SWDYFGVDAD HYIMMAAHTF TVAEGHDIRV SFDRSTSLDE 
DKWAWDGDKS YNHYRAEYMT SWEGFDFNVA VEDTSMDTDT SDTRAVLSVS RTFSL