| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1936 |
|---|
| Symbol | |
|---|
| ID | 4278848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2295550 |
|---|
| End bp | 2296527 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638134720 |
|---|
| Product | transketolase, central region |
|---|
| Protein accession | YP_750620 |
|---|
| Protein GI | 114563107 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.208007 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCTCAAA TGAATATGTT ACACGCCATC AATGAGGCGT TATCAATAGC CATGACTGCC
GACGAGCGCA TGGTGATTTT TGGTGAAGAC GTTGGCCACT TCGGTGGAGT TTTTCGCGCG
ACTTCTGGTT TACAAGAGCA GTTTGGTCGC GACCGTTGTT TTAACACGCC GCTAACTGAA
CAAGGTATTG CTGGTTTTGC TAATGGTCTA GCATCTTATG GCATGACTGC GGTTGCTGAA
ATTCAGTTTG CTGATTATAT TTTTCCGGCA TTCGATCAAA TCGTTAATGA ATCGGCAAAA
TTTAGATACC GCAGTGGTAA TCAATTTGAT GTGGGTGGGT TAACCTTCCG CACACCATAC
GGTGGTGGTA TTGCCGGTGG ACATTACCAC TCACAATCAC CTGAAGCCTA TTTTACCCAA
ACACCTGGTT TAAAAGTGGT TATTCCGCGT AATCCAGAAC AAGCTAAAGG GTTGTTGCTG
GCGTCTATTC GCGATCCAAA CCCGGTGATT TTCTTTGAAC CTAAGCGTTT GTACCGCGCA
TCTGTTGGCG AAGTCCCTGC CGGTGACTAC GTAATCGAGT TAGGCAAAGC ACAAGTGGTT
AAGCAGGGCA GCGATATTAC TGTACTGGCT TGGGGCGCAC AGATGGAAAT CGTCGAAAAA
GCCTGCGAAC GTGCCGAGAA AGAAGGTATT TCATGCGAAA TTATCGACTT ACGCACAATC
GCGCCATGGG ATGTTGAAAC TATCGCAAAA TCAGTGACCA AAACGGGTCG TTTACTGATT
AACCATGAAG CGCCATTAAC TGGCGGTTTT GCTGGTGAAA TTGCGGCAAC GATTCAACAA
GAATGTTTCT TATCGCTTGA ATCACCGATC AGTCGAGTGT GCGGCTTAGA TACGCCTTAT
CCATTAGTGC ATGAAAAAGA ATACATGCCA GATGAGTTAA AGACCTTCGA AGCCATCAAG
GCCACTGTGT CGTTTTAG
|
|---|
| Protein sequence | MAQMNMLHAI NEALSIAMTA DERMVIFGED VGHFGGVFRA TSGLQEQFGR DRCFNTPLTE
QGIAGFANGL ASYGMTAVAE IQFADYIFPA FDQIVNESAK FRYRSGNQFD VGGLTFRTPY
GGGIAGGHYH SQSPEAYFTQ TPGLKVVIPR NPEQAKGLLL ASIRDPNPVI FFEPKRLYRA
SVGEVPAGDY VIELGKAQVV KQGSDITVLA WGAQMEIVEK ACERAEKEGI SCEIIDLRTI
APWDVETIAK SVTKTGRLLI NHEAPLTGGF AGEIAATIQQ ECFLSLESPI SRVCGLDTPY
PLVHEKEYMP DELKTFEAIK ATVSF
|
|---|
| |