| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1924 |
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| Symbol | |
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| ID | 4278836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2278417 |
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| End bp | 2280426 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638134708 |
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| Product | ATP-dependent DNA helicase, RecQ family protein |
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| Protein accession | YP_750608 |
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| Protein GI | 114563095 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0514] Superfamily II DNA helicase |
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| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCCCT CACCATATAG CGACGCAGCA ACTTCTGAAG CCGCTTCAAA GTTTTTCGAT
CAACAGACGC TATATCAATT GTTACAGCAA CAATTTGGTT TTACTGAGTT CAGAGAAGGC
CAACAAGCGG TTATTGAAAC CATTTTGGCA GGTCATTCTG CATTAGCGAT ATTTCCTACC
GGTTCAGGTA AGTCCTTGTG TTATCAGTTT TGTGCCCAAC AGTTACCCAA TCTAACCTTA
GTTATTTCGC CGTTGTTGGC TTTAATGAAA GATCAGCTGG CATTTTTAGC GAGTAAAGGC
ATCGCCGCGG CCAGTATTGA TTCAAGTTTA ACTTATGATC AAACACAACA AGTGATGCGT
GATGTACGAG ATCAACGTAC GCGAATTTTG ATGGTATCAG TTGAACGTTT TAAAAATGAA
CGTTTTAGGC AATTTCTTAA ATCAGTACCG ATTTCGTTGC TGGTGGTTGA TGAAGCGCAT
TGTATTTCAG AATGGGGGCA CAATTTCAGG CCTGATTATT TAAAAATTCC ACAATATTGC
CAAGAATTTT CAATCCCTCA AAGTTTGTTA TTAACCGCAA CGGCAACTGA ACAAGTAAAA
CTGGATATGG CCAAGCGTTT TGGTTTATTA GCGGAGCAGG TAATACAAAC CGGTTTTTAT
CGCCCGAATT TAGATTTGTC GGTTGTCGCG GTTAATCAGC AACAAAAGCT CACTCAACTC
GCGCTTACCG TAAAACACTA TACTGGTGCT GGCATAGTGT ATGTAACTCT ACAACAAACT
GCTGAGGACG TTGCTGCACA CTTAATCCGT CAGGGGATAA ATGCTGCAGC GTACCATGCA
GGTATGGAGC AGACGGTTAG ACAACATATT CAACAACAAT TTATGCAGAA TCACATTCAA
GTGATTGTGG CGACGATTGC TTTTGGTATG GGCATTGATA AATCAGATAT TCGATTTGTT
ATCCATTTTG ATTTACCAAA GTCGATTGAA AATTACAGCC AAGAAATCGG TCGAGCAGGA
CGTGATGGTT TGCTAGCTCA TTGTGTGACG TTAGCAAATT TAGATGGATT AAATACTGTT
GAAAATTTTG TTTACGGCGA TACGCCAGAA GCAGATAATA TAGGTCAATT ATTAGGCATT
ATTGCATCTG AAACCGAAAA TGGTCGCTGG GAGGTACAAG AAACGCCATT ATCTACAGCA
TGTAACATTC GTTCATTGCC TTTGAAAACG TTATTTGTGC AGTTAGAACT ATTAGGCGTG
ATCCGTCCAA GCTATGCTTA TTTTGCTGAA TTTAAATATC GGTTTGTGGA AGACCAGCAA
GCCATCCTGA GTCGATTTAA CGATCAGCGC CAGCAATTCT TGAGTCAGGT ATTTGCCCAT
ACACAGTTTA AAAAGGTGTG GGGGCAACTG GATTTTGACA GTTTATATCA ACAACATGGT
TGTGAACGAC AACGAGTTGT TGCGGCATTA GACTATTTAG CTGAACAGAA TTTGATAATT
CTTGAGACAA AAAAAATCAC TCAAGTGTAT GATGTACAAC AGCAGGCATT AGCGACACCG
CAGCAATTAC AACAATTGAC CCAGCAACTC AGTCAATATT TTAGTGAGAA TGAACATAAA
GAGATTGTGC GGATTGGTAA GCTAGTCGAT TTTTTTGAAC TTGATCGTTG TTTAAGTGCA
AATTTAGCTC ACTATTTTGA TGACCACTCG GTGCCACAAG AATGTGGCCA CTGCAGCGTT
TGTCGTGGGC AAATTGCCGT CTTATCCAAA CAGGCTGTGG CTCCGTTACC AGACTCGGCC
ACAGTGACAA CATTGCTCGA ACCGTTAATG TTAGTGGCTC GAGCAAAATC GTTACCCACT
CCAACCATTG CTACGCAGGC TAAATTTCTT GCTGGTATGA TAATGCCAAT GTTTAGTCGT
TTGAAAGTTA AACAATTAGA TGGCTTTGGA CGTTTTAGTG CTTATCGATA TCAAGATATT
CTGGATACTG TTAAGAAGGT AAATTCATGA
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| Protein sequence | MTPSPYSDAA TSEAASKFFD QQTLYQLLQQ QFGFTEFREG QQAVIETILA GHSALAIFPT
GSGKSLCYQF CAQQLPNLTL VISPLLALMK DQLAFLASKG IAAASIDSSL TYDQTQQVMR
DVRDQRTRIL MVSVERFKNE RFRQFLKSVP ISLLVVDEAH CISEWGHNFR PDYLKIPQYC
QEFSIPQSLL LTATATEQVK LDMAKRFGLL AEQVIQTGFY RPNLDLSVVA VNQQQKLTQL
ALTVKHYTGA GIVYVTLQQT AEDVAAHLIR QGINAAAYHA GMEQTVRQHI QQQFMQNHIQ
VIVATIAFGM GIDKSDIRFV IHFDLPKSIE NYSQEIGRAG RDGLLAHCVT LANLDGLNTV
ENFVYGDTPE ADNIGQLLGI IASETENGRW EVQETPLSTA CNIRSLPLKT LFVQLELLGV
IRPSYAYFAE FKYRFVEDQQ AILSRFNDQR QQFLSQVFAH TQFKKVWGQL DFDSLYQQHG
CERQRVVAAL DYLAEQNLII LETKKITQVY DVQQQALATP QQLQQLTQQL SQYFSENEHK
EIVRIGKLVD FFELDRCLSA NLAHYFDDHS VPQECGHCSV CRGQIAVLSK QAVAPLPDSA
TVTTLLEPLM LVARAKSLPT PTIATQAKFL AGMIMPMFSR LKVKQLDGFG RFSAYRYQDI
LDTVKKVNS
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