| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1920 |
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| Symbol | |
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| ID | 4278832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2273286 |
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| End bp | 2274950 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134704 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_750604 |
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| Protein GI | 114563091 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTCCA TTCTTTTTTG TCTCCCCCAG CCTCGTTTCT TTCATAAACA ACCATCTTTG
CGGTTCACTC AAGCTTTATG TCTGCTAGGA GCATTTATTA CCTCAAGCCT GCCCAATGTA
TCGCTCGCAG CAGAAGTCCC CAGCCAGGTA GCACTGAGTC AGCAACAAAC AATCAATAGC
GATAATATTA ACCAGCAACC TACAGCATTG TATCTTGATA ATATGCTGCA GCTACTAAAA
CCAGCACATT CACAGCTAGG CATCACAGTG TGGGACATGA CGACTCAAAA AACAGTATTT
GAGTACAACA ATCAATCGTT AATGCAGCCG GCAAGTGTTC AAAAACTATT AACCGCATTG
GCTGCAACTA AACAACTCGG TAAAGACTTT ATTTACCAAA CTCGCTTAAC CACGTTAGCC
CAGCAACCTC TGGATAAAAG TTTGATTGAA AATGGCATAT ATTCTGGCGA TATTTACATA
GAATTTAGTG GCGATCCAAC CTTAAAATAC CAAGATTTGC GACAGTTACT TGCCTCTTTA
AGTCAGTTAG GTATTACTGA GCTTACGGGG AATATTGTAT TAACCAGCGA GCAAGATAGC
CAACTGCAGG CGCCTGGTTG GGTATGGGAT GATTTAGGGA TCTGCTACGC GGCGCCAATA
TCGCCTTTCA TCATTGATAA AAATTGTGTC TATGGTCGAT TAGCAACAAC GGGCTACAAT
AAAGTGGCCA ACATCACCAT GATGGGAAAT CGGCCCATTG AAATCAGCAA TGATGCTTAT
TTTGTCACCC CAATTGTCAA CCGACCTGTC GCTAAACCCG CTGTTCAGAC ATTAACTGAT
GCGGTTGTGC TTCCTGCATA CCTCACGGAA TCAGTACCAC AGTGTCAATT AACGTTAAGT
CGTTTCGATA ATAATCGCTA TCATCTGAGT GGCTGTCATG TCGGGGCTAA ATCGTTACCT
TTAGCAATAG CTATTACCGA ACCACAATTG TACGCGCAAC AGATCGTAGC CAAACAATTG
GCTTCTTTAG GTATTGTGCA TCAGCTACCC ATTACAGCAA GCATAATGAA CACAGAAGCG
CAGTTTATGG CTCAAAGACA AGTCATCGCC AGCCACCAAT CTGCAGCCTT GCCTCAGTTA
CTTGAAACCA TGTTGCTCAA ATCAGATAAT TTAATTGCCG ACAGTTTATT AAAAAAATTG
GGTGAGGTTT ATTATCAAGC ACCAAGTGAC TTTGCCCGGA GTGGCCAAGC ATTGAAAACC
ATTCTGTATT CAATTGGCAT CGATTTATCA AATGCAAACA TCGCTGATGG CTCTGGTTTG
TCGCGTTATA ATTTACTCAC GCCTGAACAC GTATTAAGTG TACTTACTAC CCTATACCAA
CAACCTGAAT ACCGCTTCTT ACTCGAGTTG TTACCACAAT CTGGTGTAAG TGGTACTTTG
CGCTATAAAC GCTATTTCAA TAAATCTCCG TTGAAAAACC ACGTGTTTGC TAAAACTGGC
AGTATGCTGG GCATTGCAAA CTTAGCGGGA CGAGTTAATG TAAGTAATGG TCATGATTAT
TTATTTGTTT TATTCGAAAA TGGGTTAAGT CCGCAGATTA AAAAACAACA AAAAGCGCCT
TTTTCGGCGG TGTTTTTGCA AACCATGATG GATGTCCCAA GATAA
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| Protein sequence | MNSILFCLPQ PRFFHKQPSL RFTQALCLLG AFITSSLPNV SLAAEVPSQV ALSQQQTINS
DNINQQPTAL YLDNMLQLLK PAHSQLGITV WDMTTQKTVF EYNNQSLMQP ASVQKLLTAL
AATKQLGKDF IYQTRLTTLA QQPLDKSLIE NGIYSGDIYI EFSGDPTLKY QDLRQLLASL
SQLGITELTG NIVLTSEQDS QLQAPGWVWD DLGICYAAPI SPFIIDKNCV YGRLATTGYN
KVANITMMGN RPIEISNDAY FVTPIVNRPV AKPAVQTLTD AVVLPAYLTE SVPQCQLTLS
RFDNNRYHLS GCHVGAKSLP LAIAITEPQL YAQQIVAKQL ASLGIVHQLP ITASIMNTEA
QFMAQRQVIA SHQSAALPQL LETMLLKSDN LIADSLLKKL GEVYYQAPSD FARSGQALKT
ILYSIGIDLS NANIADGSGL SRYNLLTPEH VLSVLTTLYQ QPEYRFLLEL LPQSGVSGTL
RYKRYFNKSP LKNHVFAKTG SMLGIANLAG RVNVSNGHDY LFVLFENGLS PQIKKQQKAP
FSAVFLQTMM DVPR
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