| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1918 |
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| Symbol | |
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| ID | 4278830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2269609 |
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| End bp | 2271171 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638134702 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_750602 |
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| Protein GI | 114563089 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.23924 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGGTCT TTAGTTTAAG AGCAGTAAAT AAAATTTGTA TTAAGGACAA TAATACTGGC
TGGCGAGTAT TGAGAGGGTT GATCTTCTTT TTCGTGTTGG GCTATTTAGG CGTTTTTTAT
TATCTGAGTA AACAATCAAA TTTAGCTGTA TCTGATATCA TTTTTTGCAT CATTATGTTC
TGTGGAGGAG GATTTGTCGT TTTGGTCACT CGACTGAGTT TATTGAGTTT AGTAAAAGTC
GAAAAATTGG TCATTAATGA ACGTAGTAAT GCTTTACACG ATAGCTTAAC AGGCCTACCT
AACAGAAAAT ACTTAATGGA TTCATTAAGC CAGCATGTCA ATGCTGGGCT GCCATTTAGT
CTACTGCTGA TTGATTTGAA CAGATTTAAG CAAGTAAACG ATGCATTAGG CCATTACTAT
GGTGATTTAT TGCTTATCGA AGTCGGTAAA AACATCTCTG AACATTTACC CGATGATTCA
CAGTTATTTA GACTAGGCGG AGACGAGTTT GCCGTCATTG TCACCCAAGT AGAATTAGAA
CCCCTTCAAC ACACCATTAA CACAATCCAT TTAGCACTTG AATCAGCATT TTGTATTGAA
AACTACGATT TACTTGTTGG TGCAAGCATT GGCTTAAGCC ATTTTCCTAT TCTTGCAAAT
GAAATAGGTC TGCTATTACA ACAAGCAGAT ATTGCAATGT ACTCAAGTAA GAAGTTAGCC
ACCTTATACA CTATTTATGA CCTGACTCTT GAAAACAATG CTGCCGAAAA AATGAATATC
AGTGCTTCAT TAAAACGTGC CATTGAACAA CAAGAATTTG AACTCTGGTA TCAACCTATC
ATTAATTTAC GCAACAACCG TCTTTATGGT GTTGAAGCGC TTATTCGCTG GCCTCGGCCA
GATGGCAGTT ACACCCCGCC AAGTGTGTTT ATTCATATCG CGGAACAAAC CACCCTAATA
AACCAAATAA CCGACTGGGT TATGCAACAA GTTGCAAAGG ATGTTGAACA TTTTGAATCC
TTAGGACTAT CTCTCTGTAT CCACCTCAAT TTATCAGCTA AAGATTTACA AGACCCCAAT
TTGGTCAATA AAAGTATTTC TCTTGTTAAG GGTAATCATT CATCGCAGAA GATAATGTTT
GAGATAACCG AAAGCGCAAT GATGACCAAC GTAGAGCAAG CTAAAGGTGC CATGGCACAG
ATTACTGCCG CAGGTGGTAC ATTCAGTATT GATGATTTTG GCACGGGGTT TTCTTCACTA
GAACTATTGC GAGACCTTCC TGTTACCCAA ATTAAAATTG ACGGCTCATT TATCAACAGT
ATTCATCATA GCGATGCTGA CTTGGCGATA GTTAAATCGG TAATATTTCT GTCAAAGCAC
TTGAAATGTA ACGTTGTAGC AGAAGGTGTA GAACGAAGTG CAACGGCAAC ATTATTGGCA
TCACTTGGTT GTGATCTTGC CCAAGGTTAC TACTACAGTA AACCGATACC CATTTCATCT
TTTGCCAATT ATATCCAAGA ACAACAATCA GTAAGCGCCG TAGCCAATCA AAATAGCTTT
TAA
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| Protein sequence | MLVFSLRAVN KICIKDNNTG WRVLRGLIFF FVLGYLGVFY YLSKQSNLAV SDIIFCIIMF
CGGGFVVLVT RLSLLSLVKV EKLVINERSN ALHDSLTGLP NRKYLMDSLS QHVNAGLPFS
LLLIDLNRFK QVNDALGHYY GDLLLIEVGK NISEHLPDDS QLFRLGGDEF AVIVTQVELE
PLQHTINTIH LALESAFCIE NYDLLVGASI GLSHFPILAN EIGLLLQQAD IAMYSSKKLA
TLYTIYDLTL ENNAAEKMNI SASLKRAIEQ QEFELWYQPI INLRNNRLYG VEALIRWPRP
DGSYTPPSVF IHIAEQTTLI NQITDWVMQQ VAKDVEHFES LGLSLCIHLN LSAKDLQDPN
LVNKSISLVK GNHSSQKIMF EITESAMMTN VEQAKGAMAQ ITAAGGTFSI DDFGTGFSSL
ELLRDLPVTQ IKIDGSFINS IHHSDADLAI VKSVIFLSKH LKCNVVAEGV ERSATATLLA
SLGCDLAQGY YYSKPIPISS FANYIQEQQS VSAVANQNSF
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