Gene Sfri_1897 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1897 
Symbol 
ID4278809 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2244642 
End bp2245337 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content43% 
IMG OID638134681 
Productaspartate racemase 
Protein accessionYP_750581 
Protein GI114563068 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1794] Aspartate racemase 
TIGRFAM ID[TIGR00035] aspartate racemase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACAA TCGGTATGAT AGGTGGTATG AGTTGGGAGT CGACACTCAA TTATTACAAA 
GCCATTAATC AAGGTGTTAA GTCTGCATTA GGTGGGCTGC ATTCGGCCAA AATTTGTTTA 
TACAGTGTCG ATTTTGCTGA AATAGAAACC CTGCAACATA AAGGATTGTG GCACGATACT 
GCTATTCATT TAACCACAGC CGCTAAAGCG GTTGAAGCTG GCGGGGCAGA CTTCTTATTG 
ATTTGTACCA ATACCATGCA CAAAGTGGCT GATGATATCC AAGCACAAAT CTCGATACCT 
ATTTTGCATA TTGCAGATGC CACAGCGGAG GTGTTGTTAG CCGATGGGAT CAGTAAAGTC 
GGCCTATTGG GCACGCGCTT TACCATGGAA CAGGACTTTT ATAAGCAACG GATAAGTGAT 
AACTATCCCA TTGAGGTACT GGTTCCTTCA CCACACGAGC AAACATTAAT TCATGACGTG 
ATATATCAAG AGCTATGTCT GGGCACGATA AATCCGCAAT CACGACAATG CTATCTTGGC 
ATTATTGATA AATTATATGA GCAAGGGGCT GAGGCGGTGA TTTTAGGTTG TACAGAGATA 
GCCCTATTAG TGCAGCAACA ACATACGCAT GTTCCTTTGT ATGATACGAC TCAAATTCAT 
GCCAATAAGG CCGTTATGCT GGCCTTAGCT AAGTAA
 
Protein sequence
MKTIGMIGGM SWESTLNYYK AINQGVKSAL GGLHSAKICL YSVDFAEIET LQHKGLWHDT 
AIHLTTAAKA VEAGGADFLL ICTNTMHKVA DDIQAQISIP ILHIADATAE VLLADGISKV 
GLLGTRFTME QDFYKQRISD NYPIEVLVPS PHEQTLIHDV IYQELCLGTI NPQSRQCYLG 
IIDKLYEQGA EAVILGCTEI ALLVQQQHTH VPLYDTTQIH ANKAVMLALA K