| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1895 |
|---|
| Symbol | |
|---|
| ID | 4278807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2242948 |
|---|
| End bp | 2243592 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638134679 |
|---|
| Product | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase |
|---|
| Protein accession | YP_750579 |
|---|
| Protein GI | 114563066 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0800] 2-keto-3-deoxy-6-phosphogluconate aldolase |
|---|
| TIGRFAM ID | [TIGR01182] Entner-Doudoroff aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAGC CTAATAATTG GTTGCTTCAA CCTCAAGACG TATTTAAACG CAGCCCGGTT
GTTCCGGTCA TGGTAATTAA TAAACTTGAG CATGCAGTGC CTTTAGCTAG AGCATTAGTT
GCTGGCGGTA TTAGTGTACT TGAAGTTACG CTTCGTACAC CTTGCGCCCT TGAAGCGATT
GCAAAGATTG CTAAAGAAGT ACCTGAAGCA CTTGTTGGTG CAGGCACTAT TTTAAATGAA
GCTCAGCTAA ACCAAGCGGT TGCTGCTGGT TCACAGTTTA TTATCACTCC TGGTGCAACT
GTTGATTTAC TAAAAGCAGC CAAGAAAGGC ACTGTGCCAT TGATCCCCGG TGTGGCTAGT
ATTTCTGAGA TCATGGTGGG TATGGAGTTG GGTTACACTC ACTTCAAGTT TTTCCCAGCA
GAAGCGTCTG GTGGCGTTAA TGCACTGAAA TCATTCTCTG GCCCATTGTC TGATATTCGT
TTCTGTCCAA CAGGCGGTAT TAGCCCTGCG ACTTATAAAG ATTACTTAGC ACTATCGAAT
GTTGATTGTA TTGGCGGCAG CTGGATAGCA CCGACTGATG CAGTAGACAA CGAAGAGTGG
GATCGCATTA CCCAACTGTG TAAAGAAGCG CTTGCTGCAC TGTAA
|
|---|
| Protein sequence | MIEPNNWLLQ PQDVFKRSPV VPVMVINKLE HAVPLARALV AGGISVLEVT LRTPCALEAI
AKIAKEVPEA LVGAGTILNE AQLNQAVAAG SQFIITPGAT VDLLKAAKKG TVPLIPGVAS
ISEIMVGMEL GYTHFKFFPA EASGGVNALK SFSGPLSDIR FCPTGGISPA TYKDYLALSN
VDCIGGSWIA PTDAVDNEEW DRITQLCKEA LAAL
|
|---|
| |