Gene Sfri_1894 details

Gene Information

• Locus tag: Sfri_1894
• ID: 4278806
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 2241100
• End bp: 2242926
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 638134678
• Product: phosphogluconate dehydratase
• Protein accession: YP_750578
• Protein GI: 114563065
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR01196] 6-phosphogluconate dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCACTCAG TAGTACAAGC CGTCACCGAT AGAATTATTG CACGCAGTAA ACAGTCTCGT 
TCAACGTATT TAACAGCGTT AAATGATGCC AAAGCAAAAG GTGTTCATCG CAGCGCCCTA 
AGTTGTGGCA ATTTGGCTCA TGGATTTGCG GCCTGCCAGC CAGCGGACAA AGACTCTTTA 
CGTCAACTAA CGAAAGCTAA TATTGGTATC GTAACCGCAT TTAACGACAT GTTGTCAGCG 
CATCAACCAT ACGAAACCTA TCCGAATATG CTTAAGCAAG CATGTGTGGA CGTAGGCAGT 
GTTGCGCAGG TTGCTGCCGG TGTACCTGCT ATGTGTGACG GCGTGACCCA AGGTCAGCCT 
GGCATGGAGT TAAGTTTACT GAGTCGTGAA GTCATAGCAA TGTCTACTGC GATAGGGTTA 
TCGCACAATA TGTTTGATGG TGCGTTACTG CTGGGTATTT GTGACAAAAT CGTGCCAGGT 
TTATTAATTG GCGCGTTAAG CTTTGGTCAT TTGCCGATGC TATTCGTGCC TGCGGGCCCA 
ATGAAATCGG GTATTCCGAA TAAAGAAAAA GCGCGTGTTC GTCAGCAATT TGCTCAAGGG 
CAAGTTGACC GTGCAGCACT GCTTGAAGCT GAAGCGAAGT CATACCATAG TGCTGGCACA 
TGTACTTTCT ATGGTACGGC TAACTCTAAC CAGTTAATGC TTGAAATCAT GGGCTTACAA 
CTACCTGGTT CATCGTTTGT TAATCCTGAC GATCCATTAC GTGATGAATT AAGCAAAATG 
GCCGCTAAAC AAGTTTGTCG TTTAACGTCT ATGGGCACTC AATATACACC AATTGGTGAA 
GTGGTATCTG AAAAGTCAGT AGTTAACGGC ATTGTGGGTA TTCTTGCGAC AGGCGGTTCT 
ACTAACCTAA CCATGCACAT TGTTGCTGCT GCCCGTGCTG CTGGCATTAT TGTTAATTGG 
GACGATTTTT CTGATTTGTC AGATTCAGTG CCATTGTTAG CACGCGTATA TCCAAATGGA 
CATGCTGATA TTAATCACTT CCACGCTGCT GGCGGCATGG CATTGTTGAT TAAAGAGTTA 
CTAGATGGCG GTTTATTGCA TGAAGATGTC AATACCGTTG CTGGCTTTGG ATTACGTCGT 
TATACCCAAG AACCTCGTTT GCTTGACGGC GAACTTAAGT GGGTTGACGG TGTGACTGAA 
AGCTTAGACA AAGAAGTATT AACCCACCTT GCGACGCCGT TCCAAAGCAA TGGCGGCTTG 
AAATTATTGA AAGGTAACTT AGGTCGTGCG GTGATTAAAG TGTCTGCTGT ACCTGATACT 
AATCGTGTGA TTGAAGGTCC TGCGATCGTG ATTGATGATC AAAACAAACT CGATGCACTA 
TTTCAGGCTG GTGAGCTTGA CAGAGATTGT GTTGTGGTTG TTAGAGGTCA AGGCCCTAAA 
GCTAATGGTA TGCCTGAGCT TCATAAGCTC ACACCCTATC TAGGCACCTT ACAGGACAAA 
GGTTTTAAAG TGGCATTAGT CACTGATGGC CGTATGTCTG GAGCCTCTGG TAAGGTTCCT 
GCCGCAATTC ATTTAACCCC AGAAGCACTT GATGGTGGTC TGATTGCCAA AGTTGAAAAC 
GGCGATGTGA TTCGTGTTGA TGCTACAACC GGTGAGTTAA CTCTATTTGT TGACGAGAAA 
ACACTTGCAA GCCGAACTGC AGGCAAAGTG GATTTACATC ATTCAAGTTA TGGCATGGGC 
CGTGAATTGT TTGGCGCGCT ACGTAACAGT TTAAGCAGCC CAGAAACGGG TGCTCGCAGT 
ACTAATGCGA TTGATGAATT ATATTAA 

 

Protein sequence

MHSVVQAVTD RIIARSKQSR STYLTALNDA KAKGVHRSAL SCGNLAHGFA ACQPADKDSL 
RQLTKANIGI VTAFNDMLSA HQPYETYPNM LKQACVDVGS VAQVAAGVPA MCDGVTQGQP 
GMELSLLSRE VIAMSTAIGL SHNMFDGALL LGICDKIVPG LLIGALSFGH LPMLFVPAGP 
MKSGIPNKEK ARVRQQFAQG QVDRAALLEA EAKSYHSAGT CTFYGTANSN QLMLEIMGLQ 
LPGSSFVNPD DPLRDELSKM AAKQVCRLTS MGTQYTPIGE VVSEKSVVNG IVGILATGGS 
TNLTMHIVAA ARAAGIIVNW DDFSDLSDSV PLLARVYPNG HADINHFHAA GGMALLIKEL 
LDGGLLHEDV NTVAGFGLRR YTQEPRLLDG ELKWVDGVTE SLDKEVLTHL ATPFQSNGGL 
KLLKGNLGRA VIKVSAVPDT NRVIEGPAIV IDDQNKLDAL FQAGELDRDC VVVVRGQGPK 
ANGMPELHKL TPYLGTLQDK GFKVALVTDG RMSGASGKVP AAIHLTPEAL DGGLIAKVEN 
GDVIRVDATT GELTLFVDEK TLASRTAGKV DLHHSSYGMG RELFGALRNS LSSPETGARS 
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