| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1883 |
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| Symbol | |
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| ID | 4278341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2226182 |
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| End bp | 2228386 |
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| Gene Length | 2205 bp |
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| Protein Length | 734 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638134667 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_750567 |
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| Protein GI | 114563054 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGAA AAGAGCAACA GCACTTATTG GAATTAATTG TAAATTCCAG TGCTAAACAA
CAAGGTGATT TCACAAAAAC CGCAGAGTTG GTGTGCCAAC TTCTGCGTGA GTATTTCACT
GCATCATTTG TGTCAGTTTG GACTCTGGTC AGTAAAACCG ATAACGATGA CTTTGCTGCT
GATGACAATT TCATTTGTGA GCATACTTTA GTTGCAAGTA AGATTGATGA AAAGTTGAGT
CATTCATCTC ATTTGAGACA AATCACAATA GATCCTCAGT ATTTCAATGA ACTACGGTCT
CACCGTTACA TTTTATCTTC TGACAATCCG CATATAAATC TAGTTCAAAC ATTTTCTGAT
TACTACCAAC ATCATAACAT CATCACCAGC ATTGATATTG CCATCCGAAT CAATGGCCAT
ATTGAAGGTG TGTTATCGGT TGAAAGTTGT GCCGATGTCA ATTGGATAAA ATCAGATATT
CAGTTTGCGA TTCAATGTGC TGACCAATTA GCGCTGACGT TAGCTACACG TTATACCTAT
GATAGTAATG AGCAAATTTA TTTATTACGC AATGCAACCG AACAATCAGA ACATGTAGTG
ATGCTGGTGA ATACCGATAG TCGAATCATC GAGTACGTTA ATAGTGCACA TGAGAAAATG
ACAGGGTTAC CTCGCACTAC GGTTGAACAT CATAGTGCTT CAAGTCTTGA TATTTTTAGA
AATACCCCGC AATTACTCGA CCATATCATC AGTAAATTAC GTAATAGTGA GATTGTTAAA
GGTGATCTTA AACTCGCGCG AATAGATGGC AGTGAATATT GGCTGAATTA CCACATAACA
CCGTTCGTAA CAGAACAGGG TAAGCATTAT GCGTTAGTGT CTAGTTATGA CAATTCGGCT
GAATATTTAC ACAAAGCAGA ATTAGAGCGT TTAGCATGGC ATTGCTCATT AACTGGCTTA
CACAATCGCA GTCATTTTAC CCCTCAATTA GATCGTGCCA CTGATGGGAT ATTGATTCTT
ATTGATTTAT TAGGCTTCAA ACGCTTTAAC GATACTAATG GTCATGCACA AGGCGATAGC
TTATTAATTG AGACTGCTCG GCGCCTAAAA CACTTTGCCG TATCAACCAA TGCTATTGAT
GTTGCCAGAA TAGGTAGCGA TGAATTTGCG ATATTATTGC CGCCAATGTT ACCGGAAACG
GATATAGAAC AAATGATCGG CCGGCTGTAT ATGAATCTAG CCGCTCCATC AGTTATCTCA
CGAGAAAAAG TTGAACCTAA GCCTGCGATT GCAGTGGTTG ATATTAAGTC TGTTGTCGGG
ATGTTTGCCC CGTTATCTTG TGCTGATATT ACCTTGCAAT ATGCAAAAAA GAAAAATGGT
ACTCATTACC AGTTTTTTAA TGAAGCACTA TTGGAAACAT TCACTATCAA TGCTGAAATA
GAGCGAGACT TACACCATGC GATCCGTGGT CGTGAGTTTG AGTTGTATTA TCAACCCTTA
ATGGATTTGC AAAATAATAA ATATATTGGC GCTGAAGCAT TAATTCGCTG GAATCATCCT
AAAAAAGGCG TGTTATATCC AGGCGCGTTT ATTGAAATTG CAGAACAAAC TGGAATGATT
AATCAAATCG GTGAGTGGGT ATTAGAAACG GCCTGTAAAC AATTGAATTT GTGGCAACAT
AAAAACGTTA ATATTGCGAT GCATGTGAAT GTAGCCGCGC GGCAATTTTT TAGCGGCAAT
CTGTACGAAC AAGTTTGGCG GTTGATTACC CGTTATCACA TCAAACCAAA GACTTTGATC
CTTGAAATCA CTGAAACAGA ACTCATGGGT GACATTCGTT ATGCTATTAA TTTATGTCAC
GAATTAGCAG AGTTAGGCGT AGGTTTAGCG ATTGATGATT TTGGAACGGG TTATAGTTCG
ATGAAATACC TTAAACAGTT TCCTATTTCG AAATTGAAAA TTGATCGCTC ATTTATTATG
GATATTTCTT CTAGCCACGA AAGCCGTGAG ATTGTCAGTG CGATTATTGC GATGGCAAAA
GCATTGAATA TTTCGTTAAC TGCAGAAGGG GTTGAAACCA AAGAGCAAGA GGAATTTTTA
ACATTGAGTG CTTGTCATCA TGCTCAAGGA TTTTTGTACA GTCCAGCTAT TCGCGTTAAT
GATTTTGCCT TGTTTATTAA TGCACATGAA ACAATACAAC ACTAA
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| Protein sequence | MNRKEQQHLL ELIVNSSAKQ QGDFTKTAEL VCQLLREYFT ASFVSVWTLV SKTDNDDFAA
DDNFICEHTL VASKIDEKLS HSSHLRQITI DPQYFNELRS HRYILSSDNP HINLVQTFSD
YYQHHNIITS IDIAIRINGH IEGVLSVESC ADVNWIKSDI QFAIQCADQL ALTLATRYTY
DSNEQIYLLR NATEQSEHVV MLVNTDSRII EYVNSAHEKM TGLPRTTVEH HSASSLDIFR
NTPQLLDHII SKLRNSEIVK GDLKLARIDG SEYWLNYHIT PFVTEQGKHY ALVSSYDNSA
EYLHKAELER LAWHCSLTGL HNRSHFTPQL DRATDGILIL IDLLGFKRFN DTNGHAQGDS
LLIETARRLK HFAVSTNAID VARIGSDEFA ILLPPMLPET DIEQMIGRLY MNLAAPSVIS
REKVEPKPAI AVVDIKSVVG MFAPLSCADI TLQYAKKKNG THYQFFNEAL LETFTINAEI
ERDLHHAIRG REFELYYQPL MDLQNNKYIG AEALIRWNHP KKGVLYPGAF IEIAEQTGMI
NQIGEWVLET ACKQLNLWQH KNVNIAMHVN VAARQFFSGN LYEQVWRLIT RYHIKPKTLI
LEITETELMG DIRYAINLCH ELAELGVGLA IDDFGTGYSS MKYLKQFPIS KLKIDRSFIM
DISSSHESRE IVSAIIAMAK ALNISLTAEG VETKEQEEFL TLSACHHAQG FLYSPAIRVN
DFALFINAHE TIQH
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