| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1873 |
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| Symbol | |
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| ID | 4278332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2216619 |
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| End bp | 2217302 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638134655 |
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| Product | channel protein, hemolysin III family protein |
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| Protein accession | YP_750558 |
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| Protein GI | 114563045 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
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| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.894872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATTCAT TATCAAACAC TCTGGCATCT CAGCAAACAG TTATCGAATC CACTGGATCA
GATTACTGCC AAGCGGAAGA AAAAGCCAAT GCCCTTTCAC ATGCATTAGG TATTGTTGCC
GGCATCATCG GCTTAATGTT AATGCTGATA AAAGCACCCG ATCATTTAAC CTTTGTGCAA
ATTACTGGTG TGGTAATTTA TGGTATTAGT ATTATCGCTT TGTTTCTTGC CTCTACATTA
TATCACTCAA GCAAAAGTGC ATTGTGGCGC AAACGCTATA AAATGGCAGA CCACTGTGCT
ATTTACACTT TGATTGCAGG CACTTACACG CCAATGATGC TAATCAGTTT ACAAAGCACA
CAAGCCACTG TGGTACTTAC TGCCATTTGG TCTTTAGCTT TGGGCGGGGT TATCTTTAAA
ACATTGTTTA TCGGTCGATT TAAGGCCTTT AGTGTGGTGC TGTATTTAGT GATGGGTTGG
TTATGTGTCA CTGTGATGGG CGACTTAAAA ACTCACATGA GTTACTTAGG CTTAAGCTTA
CTCCTTATAG GCGGTTTATT TTATAGTCTA GGAGTGATTT TCTATGTTGG AAAACGCATT
CCGTTTAATC ACGCCATTTG GCATTTATTT GTGCTTGGTG GGGCATTCAG CCATTTTTTA
TGTATTTATC TCACCGTACT ATAA
|
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| Protein sequence | MNSLSNTLAS QQTVIESTGS DYCQAEEKAN ALSHALGIVA GIIGLMLMLI KAPDHLTFVQ
ITGVVIYGIS IIALFLASTL YHSSKSALWR KRYKMADHCA IYTLIAGTYT PMMLISLQST
QATVVLTAIW SLALGGVIFK TLFIGRFKAF SVVLYLVMGW LCVTVMGDLK THMSYLGLSL
LLIGGLFYSL GVIFYVGKRI PFNHAIWHLF VLGGAFSHFL CIYLTVL
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