| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1866 |
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| Symbol | |
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| ID | 4278326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2206663 |
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| End bp | 2207820 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638134649 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_750552 |
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| Protein GI | 114563039 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000232808 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGAAGTA CAATTACTTT AGATAAAAAA ATCATAGATA TAATTCATTC AACCTTTGAT
GGTTACGGAC TCGAAATGAA AAAGATAATC GTACTGATTG CCATAGTGCT AGCGGCACTG
TCGGCTTACT ATTTACTGGC TCCTAAAGAA GCGATAGTTC AACGTCCTAG GCCAATACCT
AATGTGGTGG TTGCCAAGGT GGCTATTATG CCTATTCGTG ATGAAGTCGA AGCATTAGGT
ACGGGTAAAG CCTATGAGTC TATTATCGTT ACCTCTAAAG TTACTGAAAT TGTCACCAGT
ATTAATTTCA ATGATGGCGA TTTAGTTAAA AAAGGCTCGT TATTAGTACA ACTCAGAAAT
GACGAACATA AAGCCAAAGT AGCCGTTACC GAAATTAAGT TAGTTGAAAA CCTCCGCGAA
TTAGATCGTA TCCGATCATT GGTTACCAGC AAAACGATTG CAGAATTAGA ACGCGACCGT
TTACAAAGTT TAATTGATAC CACTCGTGCA GAAGTGGCTC AGGCTAAAGC TGCACTCGAA
GACCGCGCAA TTAAAGCCCC ATTTCCAGGT AAATTAGGTT TGCGCCAAGT GAGTGTGGGC
AGCTTAGTGA CCCCAGGTGA GCAAATTAGT ACCTTAGATG ATGTGAGTAA AATTAAATTA
GATTTCTCAG TGCCAGAGCG TTTTATCCAA GAATTACAAC CCGGCAAACT CGTTGAAGCT
AAAGCTGTTG CTTATCCAGA CCGGATATTT AAAGGTGTCG TTACTTCGAT TGATAGCCGC
GTGAACCCAG ATACTCGAGC GGTAGTTGTG CGCGCGGTAA TGCCTAATGA TGATTATAAG
CTACTGCCTG GCATGTTGAT GAAAGTGCGT CTTATTAAGC AAAGTCGCGA AGCATTACTA
TTACCCGAAG CTGCAATTAT TCCTATTCAA AACAAGCATT ATGTTTATGT AGTAAATGCT
GAAAATGTTG TCGAACAGCA ACAAGTTACT TTAGGCAGTC GGACACGTGG TTGGGTTGAA
ATAACCGATG GGCTTAAGGT TGACCAACAA GTGATTATTC GCGGAATTTT AAAAGTTCGA
CCAGGAGATA AAGTTCAAGT TGAACAAGCC GAAAACTTTA AGTTTGCTCA AGTAGAAGGT
ATGGAGAAGT CAGCATGA
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| Protein sequence | MRSTITLDKK IIDIIHSTFD GYGLEMKKII VLIAIVLAAL SAYYLLAPKE AIVQRPRPIP
NVVVAKVAIM PIRDEVEALG TGKAYESIIV TSKVTEIVTS INFNDGDLVK KGSLLVQLRN
DEHKAKVAVT EIKLVENLRE LDRIRSLVTS KTIAELERDR LQSLIDTTRA EVAQAKAALE
DRAIKAPFPG KLGLRQVSVG SLVTPGEQIS TLDDVSKIKL DFSVPERFIQ ELQPGKLVEA
KAVAYPDRIF KGVVTSIDSR VNPDTRAVVV RAVMPNDDYK LLPGMLMKVR LIKQSREALL
LPEAAIIPIQ NKHYVYVVNA ENVVEQQQVT LGSRTRGWVE ITDGLKVDQQ VIIRGILKVR
PGDKVQVEQA ENFKFAQVEG MEKSA
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