| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1857 |
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| Symbol | prpB |
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| ID | 4278317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2194005 |
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| End bp | 2194883 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638134640 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_750543 |
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| Protein GI | 114563030 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGCAG GTAAAAAATT TCGTCAAGCA TTAGCTAATA ACAAACCACT GCAAATTGTC
GGTACCATTA ATGCTTATGC CGCCATGATG GCCAAGCAAA TTGGCCATCA AGCCATTTAC
TTGTCTGGTG GCGGTGTGGC TAACGCCTCT TATGGTTTAC CCGACTTAGG CATGACATCA
CTCAATGATG TACTGGTTGA TGTGCAACGA ATTACTTCAG CCTGTGATTT ACCTTTGCTG
GTGGATATTG ATACGGGTTG GGGCGGGGCA TTTAATATTG CCAAGACCAT TCGTGACATG
GAAAAGGCCG GTGCTGCAGC GGTACACATG GAAGACCAAG TGGCGCAAAA GCGTTGTGGT
CATCGACCAA ATAAAGAAAT AGTGCCAGTA GAAGAAATGG TAGACCGCAT TAAAGCGGCG
GTTGATGCCC GTACCGACCC AGATTTTTTC ATCATGGCGC GTACTGACTC GTTTGCTCAA
GAAGGGTTAG AAGCCGCTAT CGAGCGTGCT AAAGCGTACG TGGCAGCCGG TGCAGACGGT
ATTTTTGCCG AAGCAATTAA AACAGAAGAG CATTATCGCG CCTTTGCTGA AGCATTAGAT
GTGCCTATTT TGGCTAACAT TACTGAGTTT GGCCAAACTG AATTATGGAA TAAGCAACAA
TTAGGCGAGT GGGGCGCGGC AATGGTGTTG TACCCATTGA GTGCATTCCG TGCGATGAAC
AAAGCGGCTG AAAATGTTTA CAGTGCTATT TTAACCGATG GCGACCAAAA AGCAGTGGTA
GATACCATGC AAACTCGTAT GGATTTATAT GACTATTTGG GTTATCACGA TTATGAACAA
AAATTAGACA GCTTATTTGC CGAAGGTAAA AATAAATAA
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| Protein sequence | MSAGKKFRQA LANNKPLQIV GTINAYAAMM AKQIGHQAIY LSGGGVANAS YGLPDLGMTS
LNDVLVDVQR ITSACDLPLL VDIDTGWGGA FNIAKTIRDM EKAGAAAVHM EDQVAQKRCG
HRPNKEIVPV EEMVDRIKAA VDARTDPDFF IMARTDSFAQ EGLEAAIERA KAYVAAGADG
IFAEAIKTEE HYRAFAEALD VPILANITEF GQTELWNKQQ LGEWGAAMVL YPLSAFRAMN
KAAENVYSAI LTDGDQKAVV DTMQTRMDLY DYLGYHDYEQ KLDSLFAEGK NK
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