Gene Sfri_1843 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1843 
Symbol 
ID4278110 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2175813 
End bp2177186 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content43% 
IMG OID638134627 
Productperiplasmic sensor signal transduction histidine kinase 
Protein accessionYP_750530 
Protein GI114563017 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR03141] heme exporter protein CcmD 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.87984 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAATG CGAGTCTGCC TTTTAATGCA AGTCAGCAAC AATTAGCGTT ACTGCGATTA 
GTCAATTGGG GCCTTAAAAT CGGCCTTATT CTGTTTGCTA CCGACTTATT TGGCTTAACC
ACGCCTCCAG TAACCTTGTC TTACGTGCTC ATATTTGAAG CTTGTTATGT CGGCTTTAGC
TACCGATTTT ATCGACTAAG CATGAACAAC AATGGTTTGT TGTTTTTAAC CTTATTGTTA
GACACCTTGT TTTGGGCCAC CTGGTTATAT TTTACCGGTG GAGCAACCAA TGCCTTTGTT
TCATTGCTGT TATTACCGAT TGCGATTTCA GCGATTACCT TACCTAGATG GGCACCGTGG
TGCTTAACCA TCGTATCGAC GATATTTTAT ACTTTGATGA TTGTTGATAT CACCGAACAA
AATAGTGGCT CGGTAATGGA TCATGACATG AGCCAAATGC CAATGACTGC TAATCATGTT
ATGCCTGCAA GCCACAGTAT GGACATGGGA TCGCACTATT TAGGCATGTG GTTTAACTTT
GTGATTTCCG CATTGGTGTT AACCGTTACC GTAGGCTTTA TTGCTAAACG CATTAGGCAA
AAAAATGCCG AGCTACGTTA TTTACGTGAA GCGCAGTTAC GCCAGGAAAA AATATTGGCC
TTAGGCACCG CATCAGCGCA AATGGCCCAC CAACTAGCAA CGCCATTAGC CACATTGCGT
TTACTCACCG ATGAGTTAGT CGATACCCAT CATGATGCAG AACAAATGGA ATTGATCAGC
GAAATGCAGC AAGCGTTGAA TCGCTGCGAG GTCACCTTAG CAGACTTACG TTTAGCGACC
GAGTCGATAC GAGAGCACAA ATTGACAGAG CAGCGTGTCG ACAAATTAGT GGCAACCTTA
ACCGAACAGA TAAGTTTGTT GATGCCAGAA GCACAACTGA ATATCGCCAT AGCACCACAA
GTTGAGTCAT GTATAGTCAT GACCGACATG AGCTTGTTGC CTGCATTAAT GGCGTTAATT
CAAAATGGCA TTCAAGCCAG TGAAGATAAC CAACACCAGA CCCGCGTAGA TATCAATATT
GGTTTGTCAC AACCCAATCA GCTGAGTATG ACTATACGTG ATTACGGTGT CGGTATTGCG
ACTCATTTAT TACAAACTTT AGGCAGTAAC ATGGTAAAAA GTCCCAAAGG GATGGGCATC
GCGGTATTAT TAAGTCACAC CAGCTTTGAG CGTTTAGGCG GTAAGTTATA CCTTAAACCA
CATTCAGAAT GCGGCACCGA AGCCATCGTG ACGTTGCCGT TAAGCGTACA AAAAACGAGT
TGCAGCTATT TTAAACGAAT AGACGCGAGT CGAAGTAAAC AGACGTTGAA GTAA
 
Protein sequence
MTNASLPFNA SQQQLALLRL VNWGLKIGLI LFATDLFGLT TPPVTLSYVL IFEACYVGFS 
YRFYRLSMNN NGLLFLTLLL DTLFWATWLY FTGGATNAFV SLLLLPIAIS AITLPRWAPW
CLTIVSTIFY TLMIVDITEQ NSGSVMDHDM SQMPMTANHV MPASHSMDMG SHYLGMWFNF
VISALVLTVT VGFIAKRIRQ KNAELRYLRE AQLRQEKILA LGTASAQMAH QLATPLATLR
LLTDELVDTH HDAEQMELIS EMQQALNRCE VTLADLRLAT ESIREHKLTE QRVDKLVATL
TEQISLLMPE AQLNIAIAPQ VESCIVMTDM SLLPALMALI QNGIQASEDN QHQTRVDINI
GLSQPNQLSM TIRDYGVGIA THLLQTLGSN MVKSPKGMGI AVLLSHTSFE RLGGKLYLKP
HSECGTEAIV TLPLSVQKTS CSYFKRIDAS RSKQTLK