Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1843 |
Symbol | |
ID | 4278110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2175813 |
End bp | 2177186 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638134627 |
Product | periplasmic sensor signal transduction histidine kinase |
Protein accession | YP_750530 |
Protein GI | 114563017 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR03141] heme exporter protein CcmD |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.87984 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAATG CGAGTCTGCC TTTTAATGCA AGTCAGCAAC AATTAGCGTT ACTGCGATTA GTCAATTGGG GCCTTAAAAT CGGCCTTATT CTGTTTGCTA CCGACTTATT TGGCTTAACC ACGCCTCCAG TAACCTTGTC TTACGTGCTC ATATTTGAAG CTTGTTATGT CGGCTTTAGC TACCGATTTT ATCGACTAAG CATGAACAAC AATGGTTTGT TGTTTTTAAC CTTATTGTTA GACACCTTGT TTTGGGCCAC CTGGTTATAT TTTACCGGTG GAGCAACCAA TGCCTTTGTT TCATTGCTGT TATTACCGAT TGCGATTTCA GCGATTACCT TACCTAGATG GGCACCGTGG TGCTTAACCA TCGTATCGAC GATATTTTAT ACTTTGATGA TTGTTGATAT CACCGAACAA AATAGTGGCT CGGTAATGGA TCATGACATG AGCCAAATGC CAATGACTGC TAATCATGTT ATGCCTGCAA GCCACAGTAT GGACATGGGA TCGCACTATT TAGGCATGTG GTTTAACTTT GTGATTTCCG CATTGGTGTT AACCGTTACC GTAGGCTTTA TTGCTAAACG CATTAGGCAA AAAAATGCCG AGCTACGTTA TTTACGTGAA GCGCAGTTAC GCCAGGAAAA AATATTGGCC TTAGGCACCG CATCAGCGCA AATGGCCCAC CAACTAGCAA CGCCATTAGC CACATTGCGT TTACTCACCG ATGAGTTAGT CGATACCCAT CATGATGCAG AACAAATGGA ATTGATCAGC GAAATGCAGC AAGCGTTGAA TCGCTGCGAG GTCACCTTAG CAGACTTACG TTTAGCGACC GAGTCGATAC GAGAGCACAA ATTGACAGAG CAGCGTGTCG ACAAATTAGT GGCAACCTTA ACCGAACAGA TAAGTTTGTT GATGCCAGAA GCACAACTGA ATATCGCCAT AGCACCACAA GTTGAGTCAT GTATAGTCAT GACCGACATG AGCTTGTTGC CTGCATTAAT GGCGTTAATT CAAAATGGCA TTCAAGCCAG TGAAGATAAC CAACACCAGA CCCGCGTAGA TATCAATATT GGTTTGTCAC AACCCAATCA GCTGAGTATG ACTATACGTG ATTACGGTGT CGGTATTGCG ACTCATTTAT TACAAACTTT AGGCAGTAAC ATGGTAAAAA GTCCCAAAGG GATGGGCATC GCGGTATTAT TAAGTCACAC CAGCTTTGAG CGTTTAGGCG GTAAGTTATA CCTTAAACCA CATTCAGAAT GCGGCACCGA AGCCATCGTG ACGTTGCCGT TAAGCGTACA AAAAACGAGT TGCAGCTATT TTAAACGAAT AGACGCGAGT CGAAGTAAAC AGACGTTGAA GTAA
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Protein sequence | MTNASLPFNA SQQQLALLRL VNWGLKIGLI LFATDLFGLT TPPVTLSYVL IFEACYVGFS YRFYRLSMNN NGLLFLTLLL DTLFWATWLY FTGGATNAFV SLLLLPIAIS AITLPRWAPW CLTIVSTIFY TLMIVDITEQ NSGSVMDHDM SQMPMTANHV MPASHSMDMG SHYLGMWFNF VISALVLTVT VGFIAKRIRQ KNAELRYLRE AQLRQEKILA LGTASAQMAH QLATPLATLR LLTDELVDTH HDAEQMELIS EMQQALNRCE VTLADLRLAT ESIREHKLTE QRVDKLVATL TEQISLLMPE AQLNIAIAPQ VESCIVMTDM SLLPALMALI QNGIQASEDN QHQTRVDINI GLSQPNQLSM TIRDYGVGIA THLLQTLGSN MVKSPKGMGI AVLLSHTSFE RLGGKLYLKP HSECGTEAIV TLPLSVQKTS CSYFKRIDAS RSKQTLK
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