Gene Sfri_1832 details

Gene Information

• Locus tag: Sfri_1832
• ID: 4278099
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 2162463
• End bp: 2164430
• Gene Length: 1968 bp
• Protein Length: 655 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 638134616
• Product: AMP-dependent synthetase and ligase
• Protein accession: YP_750519
• Protein GI: 114563006
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1022] Long-chain acyl-CoA synthetases (AMP-forming)

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.551344
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTTCAT CAATTAGCAA TAATGAAAAT GATTTTGAAA TGGAAAGTTT AAATACTTTC 
CCTAAAATTT TACAACATAA TGCAAAAAAT TGGCCTAACG ATGTGTCAAT GCGTGAGAAA 
GAGTTTGGTA TTTGGAATGA ATTCACCTGG AATGACTATA ACAATCGTGT GAAATGGCTA 
TCAACAGCTT TACTCGATAT GGGAGTAGAA AAAGGCGATG CTATTGCCTT GCTTGGTGAT 
AATAGACCTG AATGGGTGTG GGGCGAAGTC GCTGCCCATG CGATGCGATG TTACTCGATT 
GGAATCTATC AAGACTCGAT GCATGACGAG GTGATTTACC TACTCGATAG CAGTGGCGCG 
ACTGTTGTTA TTGCTGAGAA TGAAGAGCAA TGTGACAAGT TACTTGAGCT TGGTGATGGC 
ATTCCTAAAG TGAAGTACAT TGTATATTGC GACCCACGAG GTATGCGTAA ATATGATGAT 
CCACGCCTTA TTGATATAGA GACACTTTAT AAACGTGGTC AAGAAATTGA TAAAGCACAA 
CCAACGTATT ATGGCCAATT AGTTGCAGCA ACAACGCCAG AAGATACAGC TATTTACTGC 
ACGACATCAG GTACCACGTC TAAACCTAAA ATTGCACTTT TAAATGGAGG AAATTTTGTT 
AAGCACTGTA GCGCTTACTT AAGAGCCGAT CCTCGTAATG CGGGTGATAA TTATGTTTCT 
GTGCTGCCAT TACCTTGGAT CATGGAACAG GTTTATGCCG TTGGTCAAGC GTTGATAGCC 
CGCCAAATTG TCAACTTTGT TGAAGAGCAA GAAACCTTAA TGTCTGACTT ACGTGAAATT 
GGTCCGAGTT TTGTTTTGCT TGCGCCTCGC GTTTGGGAAG GCATATTGGC AGATGTTCAA 
GCGCGTATGA TGGATTCAAC CCCGCTTAAA AGAAAACTGT TTAACTATGC TATGAAGTTG 
GCTAAAGAGA GCCAAGCACA GGGTAAAAAG TCTTGGCTTG CTGATGTCTT ATTGATGAAA 
GCTCTACGCG ATAGGTTGGG TTTTTCATTT TTAAAATCCG CTGCTACGGG CGGGGCTGCT 
ATGGGACCTG ATACTTTTAG GTTTTTCCAA ACTATCGGAG TGCCGTTACG TCAACTTTAT 
GGACAAACTG AAATGTGTGG TGCCTACACA ATTCATCATG AAGGTGATGT TGATTACGAT 
AGTGTAGGGG TTGCTTTTGA TAATGCCCAA GTAAAAGTCA TTAACACTGA TGAAGAAGGC 
GTTGGTGAAA TTATTGCTAA AACAGTTGGA ATGTTTACAG GCTACTTAAA TAACCAAAAA 
GCGTATGACG AAGATGTTAT TGATGGTTGG ATGCAAACAG GTGATGCAGG CTACTTTAAA 
CCGTCTGGCC ACCTAGTGGT CATTGATCGT ATTAAAGATC TTGCTTGTAC CAGCAATGGC 
GTCCAGTACT CACCACAATA TATTGAAAAT AAATTGAAGT TTTCATCATT TATCGGTGAA 
GCCGTCATCT TAGGAAAAGA TCGTCCGTAT CTTTCTGCTC TTATCTGTAT TCGCTTTAGC 
ATTGTCGCCA AATGGGCGGA ACAACAAGGT TATGCATTCA CTAACTACAC CAATTTATCT 
ACGCTCCCCC AGGTGTATGA AAAAATGAGT GAAGAGATTG CACGTGTTAA TGAATCACTG 
CCTGAAGCAC AAAAAATCCA TAAGTTTTTA CTACTTTATA AAGAGCTTGA TGCCGATGAT 
GGTGAATTAA CACGTACACG TAAAGTGAGG CGTGGGGTTA TTGCCGATAA ATACGGCGAT 
ATTATTTCAT CTATCTATGA AGACAAAGAA AAGGTTGATA TTGATACCGT TATTGTCTTT 
CAGGATGGTA CTAAAACGCG TATTCAAACA GCGCTTACAG TGGCTTCGCT TTTACCTAAT 
CCCGATACAT CAACAAATGA ACTCACATCA GAACGGAGAG CATCATGA 

 

Protein sequence

MASSISNNEN DFEMESLNTF PKILQHNAKN WPNDVSMREK EFGIWNEFTW NDYNNRVKWL 
STALLDMGVE KGDAIALLGD NRPEWVWGEV AAHAMRCYSI GIYQDSMHDE VIYLLDSSGA 
TVVIAENEEQ CDKLLELGDG IPKVKYIVYC DPRGMRKYDD PRLIDIETLY KRGQEIDKAQ 
PTYYGQLVAA TTPEDTAIYC TTSGTTSKPK IALLNGGNFV KHCSAYLRAD PRNAGDNYVS 
VLPLPWIMEQ VYAVGQALIA RQIVNFVEEQ ETLMSDLREI GPSFVLLAPR VWEGILADVQ 
ARMMDSTPLK RKLFNYAMKL AKESQAQGKK SWLADVLLMK ALRDRLGFSF LKSAATGGAA 
MGPDTFRFFQ TIGVPLRQLY GQTEMCGAYT IHHEGDVDYD SVGVAFDNAQ VKVINTDEEG 
VGEIIAKTVG MFTGYLNNQK AYDEDVIDGW MQTGDAGYFK PSGHLVVIDR IKDLACTSNG 
VQYSPQYIEN KLKFSSFIGE AVILGKDRPY LSALICIRFS IVAKWAEQQG YAFTNYTNLS 
TLPQVYEKMS EEIARVNESL PEAQKIHKFL LLYKELDADD GELTRTRKVR RGVIADKYGD 
IISSIYEDKE KVDIDTVIVF QDGTKTRIQT ALTVASLLPN PDTSTNELTS ERRAS