Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1818 |
Symbol | |
ID | 4278086 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2144731 |
End bp | 2145582 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638134603 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_750506 |
Protein GI | 114562993 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.158267 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCAGTT TTGATGAAAG AGTTATTCCC TTAGATGCAT GGATCACAAG CCTTGTTGAC TGGTTGGTAG AAGGGTATCG ATGGTTTTTT CAGATGATAA AATGGCCCGT AGACTTCATT TTATCAAGTG TGTCAGATGG ACTTCTGGCA ACTCCACCTC TACTTGTTAT CGCACTGTTT GGCGTCATTG CTTGGCGGGT GTCAGGTTTC AAACTTGCTG GTTTTACGCT TGCATCGTTG ATTCTCATTG GTCTGCTTGG TTTCTGGTCT GAAACCATGA TAACCCTCGC CATGGTATTT TCATCTGTTG TGTTCTGTAC TGTTGTTGGA GTGCCATTTG GTATATGGGC TGGACGCAGT GATCGTGTTA ATAACATTCT CCGACCCATT TTGGATGCGA TGCAGACAAC GCCAGCCTTT GTCTATTTGG TACCTATTGT GATGCTTTTT TCAATTGGCA ACACAGCAGG TGTTCTTGCA ACCATCATTT TTGCCCTGCC ACCGTTGGTT AGATTAACCA GTCTCGGTAT CAGGCAGGTA CACCCAGAGT TAGTCGAGGC TGCGCTCGCC TTTGGGGCAA CAAGCTCGCA GGTTTTACTT AAAGTTCAGA TACCACTTGC TCTTCCGACC ATCATGGCTG GCCTTAATCA GACCATCATG ATGTCGCTCT CCATGGTGGT TATCGCCGCA ATGATTGGCG CAGGAGGCCT CGGGGCACCT GTCGTTCTGG GCTTAAATAC ACTTGATATT GGTTTGGCCA CGGTTGGCGG TCTTGCGATT GTTTTATTAG CAATCATTTT AGATAGAATC ACCCAATCAA TGGCAACCCC AAAAAATAAG GACGTAAAAT GA
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Protein sequence | MFSFDERVIP LDAWITSLVD WLVEGYRWFF QMIKWPVDFI LSSVSDGLLA TPPLLVIALF GVIAWRVSGF KLAGFTLASL ILIGLLGFWS ETMITLAMVF SSVVFCTVVG VPFGIWAGRS DRVNNILRPI LDAMQTTPAF VYLVPIVMLF SIGNTAGVLA TIIFALPPLV RLTSLGIRQV HPELVEAALA FGATSSQVLL KVQIPLALPT IMAGLNQTIM MSLSMVVIAA MIGAGGLGAP VVLGLNTLDI GLATVGGLAI VLLAIILDRI TQSMATPKNK DVK
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