Gene Sfri_1818 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1818 
Symbol 
ID4278086 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2144731 
End bp2145582 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content46% 
IMG OID638134603 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_750506 
Protein GI114562993 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4176] ABC-type proline/glycine betaine transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.158267 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCAGTT TTGATGAAAG AGTTATTCCC TTAGATGCAT GGATCACAAG CCTTGTTGAC 
TGGTTGGTAG AAGGGTATCG ATGGTTTTTT CAGATGATAA AATGGCCCGT AGACTTCATT
TTATCAAGTG TGTCAGATGG ACTTCTGGCA ACTCCACCTC TACTTGTTAT CGCACTGTTT
GGCGTCATTG CTTGGCGGGT GTCAGGTTTC AAACTTGCTG GTTTTACGCT TGCATCGTTG
ATTCTCATTG GTCTGCTTGG TTTCTGGTCT GAAACCATGA TAACCCTCGC CATGGTATTT
TCATCTGTTG TGTTCTGTAC TGTTGTTGGA GTGCCATTTG GTATATGGGC TGGACGCAGT
GATCGTGTTA ATAACATTCT CCGACCCATT TTGGATGCGA TGCAGACAAC GCCAGCCTTT
GTCTATTTGG TACCTATTGT GATGCTTTTT TCAATTGGCA ACACAGCAGG TGTTCTTGCA
ACCATCATTT TTGCCCTGCC ACCGTTGGTT AGATTAACCA GTCTCGGTAT CAGGCAGGTA
CACCCAGAGT TAGTCGAGGC TGCGCTCGCC TTTGGGGCAA CAAGCTCGCA GGTTTTACTT
AAAGTTCAGA TACCACTTGC TCTTCCGACC ATCATGGCTG GCCTTAATCA GACCATCATG
ATGTCGCTCT CCATGGTGGT TATCGCCGCA ATGATTGGCG CAGGAGGCCT CGGGGCACCT
GTCGTTCTGG GCTTAAATAC ACTTGATATT GGTTTGGCCA CGGTTGGCGG TCTTGCGATT
GTTTTATTAG CAATCATTTT AGATAGAATC ACCCAATCAA TGGCAACCCC AAAAAATAAG
GACGTAAAAT GA
 
Protein sequence
MFSFDERVIP LDAWITSLVD WLVEGYRWFF QMIKWPVDFI LSSVSDGLLA TPPLLVIALF 
GVIAWRVSGF KLAGFTLASL ILIGLLGFWS ETMITLAMVF SSVVFCTVVG VPFGIWAGRS
DRVNNILRPI LDAMQTTPAF VYLVPIVMLF SIGNTAGVLA TIIFALPPLV RLTSLGIRQV
HPELVEAALA FGATSSQVLL KVQIPLALPT IMAGLNQTIM MSLSMVVIAA MIGAGGLGAP
VVLGLNTLDI GLATVGGLAI VLLAIILDRI TQSMATPKNK DVK