| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1817 |
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| Symbol | |
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| ID | 4278085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2143466 |
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| End bp | 2144704 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134602 |
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| Product | glycine betaine/L-proline ABC transporter, ATPase subunit |
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| Protein accession | YP_750505 |
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| Protein GI | 114562992 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4175] ABC-type proline/glycine betaine transport system, ATPase component |
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| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.515107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAATA TTATGGAAAA AATAGTAATA AAAAACCTCT ATAAGGTTTT TGGTTCTGAG
CCTCGCAAGG GAGTGAAATT ACTTGAACAA GGGAAAAGCA AAGAAGAAAT TTACGAACAG
ACAGGGCTTA CAGTTGCAGT ACAAGGTGCA AGTTTTACCG TAAACAAAGG TGAAATTTTT
GTCGTGATGG GTCTGTCTGG CTCAGGAAAA TCAACTCTAG TAAGAATGCT AAACAGGCTC
ATTGAACCAA CATCTGGAGA GGTGTTAGTT GATGGTCAAA ATATCCTCAA AATGAATAAG
GATGAGCTGG TAAGGTTTCG CAGAAGCAAA ACCAGTATGG TCTTTCAGTC TTTCGCTCTT
ATGCCTCATC AGACAGTGTT AGAAAATGCA GCTTTTGGCC TCGAGCTTGA TGGCATGGAT
AAGAAACAGC GTGAAGAGCG AGCTCTAGAT GCCTTAAAAC AAGTCGGACT TGAAGGCTTG
GAGAATGCAT ATCCCAATGA GTTAAGTGGT GGTATGCAGC AGCGAGTGGG ATTGGCGCGA
GGCTTAGCGG TTGATCCTGA TATCTTGCTC ATGGATGAGG CATTTTCGGC GCTTGATCCT
CTTATTAAGA CAGAAATGCA GGATGAACTG TTGAAACTGC AAGACCGTCA TGAGCGCACC
ATCATTTTTA TTTCCCATGA TTTAGACGAA GCATTACGTA TTGGCGACCG AATTGCCATC
ATGCAGGGCG GCCGAGTTAT TCAAGTGGGG ACGCCAGAAG AGATTTTGCA AAATCCCGCT
GACGATTATG TACGCGCATT TTTCCGTGGT GTGGATCCAA CCGGTGTTAT CTCCGCAGGG
GACATTGCCC GCGATAGCCA GCCAACGGTC GTTTGGCATA CTAAAGCAGG TAGCCCACGA
GCCACATTAG AAATGTTGAG TATGAAAGAT CGCGAATTTG CCTATGTACT CGACTCAGAA
CATCGTTATT TGGGTGTTGT TTCTTCTGAT TCTCTGCGCG ACGCTATTGA CCAGGGGAAT
GGTACCAGCA AACTTGAGCA TGCTTTCCTT ACAGAAGCTA AATCGGTTCA GGAAACCGAT
AGCCTTCAGG ACATTTTATC TTTGGTAGCA TCTCATTCTT GGCCTATTCC AGTTGTAAAC
TCAGAAAATA GATATCGCGG AGTTGTTTCT AAAAATCTGT TTCTTCGTAC CTTAAACCGT
GCAGAAAAGG GGACTTATTT TGAGCAGTCA GCATCTTAG
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| Protein sequence | MENIMEKIVI KNLYKVFGSE PRKGVKLLEQ GKSKEEIYEQ TGLTVAVQGA SFTVNKGEIF
VVMGLSGSGK STLVRMLNRL IEPTSGEVLV DGQNILKMNK DELVRFRRSK TSMVFQSFAL
MPHQTVLENA AFGLELDGMD KKQREERALD ALKQVGLEGL ENAYPNELSG GMQQRVGLAR
GLAVDPDILL MDEAFSALDP LIKTEMQDEL LKLQDRHERT IIFISHDLDE ALRIGDRIAI
MQGGRVIQVG TPEEILQNPA DDYVRAFFRG VDPTGVISAG DIARDSQPTV VWHTKAGSPR
ATLEMLSMKD REFAYVLDSE HRYLGVVSSD SLRDAIDQGN GTSKLEHAFL TEAKSVQETD
SLQDILSLVA SHSWPIPVVN SENRYRGVVS KNLFLRTLNR AEKGTYFEQS AS
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