Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1809 |
Symbol | |
ID | 4277448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2133187 |
End bp | 2134767 |
Gene Length | 1581 bp |
Protein Length | 526 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638134594 |
Product | choline/carnitine/betaine transporter |
Protein accession | YP_750497 |
Protein GI | 114562984 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGATAA ATAAGGACAA ATACAGTATA GATAATACCG ATTATACTGT TGGACAGGAT AACATCCAAA AATGGGGCTT TGATATTCAT AACGCCGTTT TTGGGATAAG CGCAGGGTTA ATCGCTGCTT TTTTAATTGC AATCTTAATT ATCGATCCGG CAACATCAAA AGAGTTTTTA GATGGCTTAA AATGGCAAAT TATCGGCACA TTTGACAGTC TCTTTATGTG GTCTGCTAAT ATTTTTGTGA TTTTTTGCTT AGCATTAATC GTTTCTCCTT TTGGTAAAAT TCGCTTAGGC GGAGATGATG CAAAAGCTGA TTATTCAAGA CTTTCATGGA TAGCAATGCT TTTTGCTGCA GGCATGGGTA TTGGTTTGAT GTTTTGGGGC GTTGCAGAAC CTTTAGCATA TTACACCGGT TGGTATGAAA CACCATTGAA TGTGGTTGCT AATACACCTG AAGCTGCAGA ACTTGCACTT GGTGCCACAA TGTTCCATTG GGGATTACAT CCTTGGTCAA TTTATGGCGT GGTAGCGCTG TCTATGGCTT TCTTTGCTTA TAACAAAGGT TTACCACTTT CTATTCGTTC GGCTTTTTAC CCTATATTGG GTGACCGCAC ATGGGGCTGG CCTGGACATA TCATTGATAT TTTCGCCGTA TTAGCCACAT TATTTGGTCT AGCAACCTCA TTAGGTTTAG GTGCTCAACA AGCTGCAGCT GGGTTCCATC ATGTGTTTGG CATTGAAGCC GGCTTAACCC TACAAATCAC TATTATTGTA GTAGTGACGT TGTTAGCTGT TATCTCGGTA GTACGCGGCC TTGAAGGCGG CGTTAAAGTC ATTAGTAATA TCAATATGTT ACTAGCTGTT GCTTTACTCA TTTTTGTAGC ACTTGTTACT TTTGCTGTTT CAATGGGTAC AATTCCAACA ACGGTAATGG GTTATATAAA GAATATTATT CCATTGAGTA ATCCAATCGG TCGTGAAGAC GAAGCTTGGA TGCACGGTTG GACTGTGTTT TATTGGGCGT GGTGGATTTC ATGGTCACCA TTTGTGGGTA TGTTTATTGC TCGTATCTCA CGCGGTCGTA CAGTACGTGA ATTTCTTTCC ACTGTATTGA TTGTGCCAAC CGTAGTCACT ATTTTATGGA TGTCTGTATT TGGTGGTATC GCAATTGATC AAGTTATCAA TAATGTGGGT ACATTGGGCA GTAAGGGATT AACTGAAGTT CCGCTAGCTA TGTTCCAAAT GTTTGATTCG TTGCCTTTAG GTAATCTGTT ATCAATGTTG GCTGTGCTAT TGGTGCTGGT TTTCTTTATT ACTTCTTCGG ATTCAGGCTC ACTAGTTATC GACAGTATTA CTGCTGGTGG TAAAATTGAT GCTCCGATCC CTCAACGCAT CTTTTGGGCT GTAATAGAAG GTGCTATTGC AGCTGTATTA CTTTGGGTTG GTGGTACTCA GGCGATTGAA GCACTTCAAG CGGGTGCTAT TTCAACTGGA TTACCCTTTA CCATTATTCT ATTGGTTATG TGTGTCAGTT TGTTGATGGG TATGCGTACC GAAAAGCATA ATAAAAGCTA A
|
Protein sequence | MKINKDKYSI DNTDYTVGQD NIQKWGFDIH NAVFGISAGL IAAFLIAILI IDPATSKEFL DGLKWQIIGT FDSLFMWSAN IFVIFCLALI VSPFGKIRLG GDDAKADYSR LSWIAMLFAA GMGIGLMFWG VAEPLAYYTG WYETPLNVVA NTPEAAELAL GATMFHWGLH PWSIYGVVAL SMAFFAYNKG LPLSIRSAFY PILGDRTWGW PGHIIDIFAV LATLFGLATS LGLGAQQAAA GFHHVFGIEA GLTLQITIIV VVTLLAVISV VRGLEGGVKV ISNINMLLAV ALLIFVALVT FAVSMGTIPT TVMGYIKNII PLSNPIGRED EAWMHGWTVF YWAWWISWSP FVGMFIARIS RGRTVREFLS TVLIVPTVVT ILWMSVFGGI AIDQVINNVG TLGSKGLTEV PLAMFQMFDS LPLGNLLSML AVLLVLVFFI TSSDSGSLVI DSITAGGKID APIPQRIFWA VIEGAIAAVL LWVGGTQAIE ALQAGAISTG LPFTIILLVM CVSLLMGMRT EKHNKS
|
| |