Gene Sfri_1804 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1804 
Symbol 
ID4277443 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp2124943 
End bp2125602 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content40% 
IMG OID638134588 
Producthypothetical protein 
Protein accessionYP_750492 
Protein GI114562979 
COG category[R] General function prediction only 
COG ID[COG0670] Integral membrane protein, interacts with FtsH 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.372462 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCAAC AATCAGTTAT ATCACCTAGT CTATCGACTA CTGATGTCAA CAAAATGCTA 
AAAAACACTT ATATGTTGCT GGCAATGACA TTGGCATTTT CTGCAGTAAC TGCAGGTTTA 
GCCATGGCAA TCAACATTGG CCCAATGATG TCTTTAGGCT TATCACTGGG TAGCTTAGTG 
TTATTATTTG TAACCCTTAA AAAAGCCGAC AGTGCTGCTG CTATATTTTG GGTGTTTGCC 
TTTACCGGTA TGCAAGGCGC GTCGCTCGGT TACATTCTTA ACCATTATGC TGGTATGGCA 
AATGGCCCTG GCTTAATTAT GCAGGCATTA GGGTTAACCT CTATCATTTT CGTGTCGCTT 
TCAGCGTATG CGTTAACCAC TAAGAAAGAC TTCTCATTTA TGGGCGGCTT CTTATTTGCG 
GGTTTATTAG TAATGATCGG TGCTATGGTC ATTAACATAT TCGTTGGTAG CTCAATATTA 
TTTATGGCAA TGAATGCAGG TATTGCGTTG CTAATGACTG GTTTCATTCT ATATGACACT 
AGTCGTATCG TGAATGGCGG CGAAACAAAC TACGTTCGTG CGACTATTTC ATTGTACTTA 
GATTTTTTGA ACTTGTTCAT AAGCCTACTA CATTTAATGG GTATTGGCAG CGACGACTAA
 
Protein sequence
MNQQSVISPS LSTTDVNKML KNTYMLLAMT LAFSAVTAGL AMAINIGPMM SLGLSLGSLV 
LLFVTLKKAD SAAAIFWVFA FTGMQGASLG YILNHYAGMA NGPGLIMQAL GLTSIIFVSL 
SAYALTTKKD FSFMGGFLFA GLLVMIGAMV INIFVGSSIL FMAMNAGIAL LMTGFILYDT 
SRIVNGGETN YVRATISLYL DFLNLFISLL HLMGIGSDD