| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1792 |
|---|
| Symbol | |
|---|
| ID | 4277431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2112221 |
|---|
| End bp | 2114476 |
|---|
| Gene Length | 2256 bp |
|---|
| Protein Length | 751 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 638134576 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_750480 |
|---|
| Protein GI | 114562967 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.016271 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATAG GGCCGCATAT CAATAAATTA GTTGAAGATA CCAACCAGTA TGATTTTCGA
GAATCGAGTA TTGAGCGATA CAGTACAATA CTCGATATGG TATTGCAGGG GCTGCCATTA
GGCGAAATGC TTCATGCTTT AGTTTTATTG ATTGAAGCAC AAAAGATTGG CACTCGTGCA
TCAGTGCTTT TGTTGAGTGA TGACGGTAAA AGGTTACTAT CGTGCGCAGC TCCTAACCTT
CCTGAAGAGT ATAACAATGC CATTAGCGGT ACAGAGATAG GCATTGATGT GGGCTCTTGT
GGCGCAGCAG CATTTACACG TGAAAGAGTC ATTGTTGAAG ATATTGAGCA TCATCCAAAT
TGGAAAAATT TTAAAGAGAT ACCTTTAAAA GCCGGATTAA AAGCGTGTTG GTCTGAACCA
ATAAAAGACA GTAATCAAAA TGTACTCGGT ACTTTTGCCA TGTACTATGA CACGATTAAA
TCGCCGTCGG AGCAAGATTT ACACCTAATA CAAGAAGCGG CACGTTTGGC CAGTTTAGCC
ATTGAACGAA GCCGTGGAAT GCATATTCAA CGGTTAAGTA GCAAAATATT TAACAGCTTG
CCCATTGCGT TAGTTATTAC CAGTGAAGAC AACTCGGTAT TATCAGCCAA TCCAATTTTT
AAATCCTTAA CGTCTACCTA TTACGCCAAT CTTAAATTAT TTGATGTTAA TCGCTTTTTG
AGTCACTCCC AACAAGATGT AGTAGCAGAT TTATTTGAGC ATTTAAAGCG CGGACACCCT
TGGCAAGGGG AGTTAAAAGG TCTTAAAACC GACAATGATA TTATTGATAT CTCGCTTAAT
GTGACCGTTA TTAGGGATAG TTTTACGCAA CAGAATTGTT TTGCATGGTT AATTACCGAT
ATTTCCGCAC GTAAAAACGC TGAAAAAATG ATTAACTTTC AATCCAACTA TGATCAACTT
ACCGGATTGT CGAACCGTAA ATACTTGTTT GAAAGTCTAC AAGCAATGAT AGATTCAGAA
GACAGCGTTA ACGGTTGTAA GCAAGACTTT AGCTTGATGT TGATGGATAT CGACCATTTT
AAACAAATTA ACGACACCCT CGGGCATGAT AATGGTGACC TTGTATTGAA ATTTGTCGCG
CAGCGTTTAC TGAGTGCCAT TCCTGATAAT GTTCTTATTG CACGTATTGC AGCTGATGAA
TTTGCATTAG TGTTACCGGG TAAAATGTGT TCCGAGTCAT TAATTAGTCT TTTTGATGAT
CTAACGAATG AGTTGAAAAA GCTTTTTATT GTTGGCGGTC AAGATGTCAT GTTATCCATG
AGTACTGGCC TAGCTCGTTA TCCACACGAT GCTGATAATG TGGAACAAAT ATTAAATTGC
GCCACTCAAG CTATGTACAA CGCAAAATCT CGAGGTCGTA ATTGTCTGCA GTTTTTTAAT
CAGCAAATCC AAAAAGATGC TGAAAGACAT GCTGAATTGT ACTTACACCT TAAATCTGCA
TTGAGCCATA ATGAATTTGA ACTGTATTAT CAACCCATTG TGAATCCGTT TAGTGGCCAA
ATCATTAAAG CAGAAGTGTT ATTGCGCTGG ATACATGATG GTCAATTTAT TTCGCCAGAT
GAGTTTATTC CTATTGCAGA AGAGTCGGGT TTAATAGTTC AAATAGGTGA GTGGGTGAGA
ACGCAAGCGT TAACCAGTAT CATCGCATTG CAAAAAAGCG GTTACGCCAT TCCTTTTGCC
ATTAATGTAT CGACGATTGA ATTTTGGACG AGCGATCTAC AACAACGCTT TTTAAACTAT
TTTGATAACA TTTCAGAAGC GCTAGGCGGC GAGATCCCGT ATCAGTTGAT CACTTTAGAG
ATCACCGAAT CATTAATGAT GAAACAACAA TCATCGATTA GCCAATTATT AACAGAACTT
CGGCATCGTG GAATGCAAAT TTCAGTAGAT GATTTTGGTA CTGGTTATTC ATCTTTATCG
TATTTGGCAA ACTTCCCAGT GGATCAAGTT AAAATTGATA AATCCTTTAT CCAGAAAATT
TCATTGGGGG CGCGACATGA AGCGTTGATT GAAGCTATTG TCAGTATGAG TCGGGCATTA
GATCTGTCAA TTGTCGCTGA AGGTGTTGAA ACTGAAGTTG AATTAAATTT CATCAAAAAA
CAGAATATAG AAGCGGTGCA AGGGTATTAT TTTTATAAAC CTATGCCGAA AAATGACTTC
TTTGATTTAT TGGCGAAACA ATCTCGTATA TTTTAA
|
|---|
| Protein sequence | MDIGPHINKL VEDTNQYDFR ESSIERYSTI LDMVLQGLPL GEMLHALVLL IEAQKIGTRA
SVLLLSDDGK RLLSCAAPNL PEEYNNAISG TEIGIDVGSC GAAAFTRERV IVEDIEHHPN
WKNFKEIPLK AGLKACWSEP IKDSNQNVLG TFAMYYDTIK SPSEQDLHLI QEAARLASLA
IERSRGMHIQ RLSSKIFNSL PIALVITSED NSVLSANPIF KSLTSTYYAN LKLFDVNRFL
SHSQQDVVAD LFEHLKRGHP WQGELKGLKT DNDIIDISLN VTVIRDSFTQ QNCFAWLITD
ISARKNAEKM INFQSNYDQL TGLSNRKYLF ESLQAMIDSE DSVNGCKQDF SLMLMDIDHF
KQINDTLGHD NGDLVLKFVA QRLLSAIPDN VLIARIAADE FALVLPGKMC SESLISLFDD
LTNELKKLFI VGGQDVMLSM STGLARYPHD ADNVEQILNC ATQAMYNAKS RGRNCLQFFN
QQIQKDAERH AELYLHLKSA LSHNEFELYY QPIVNPFSGQ IIKAEVLLRW IHDGQFISPD
EFIPIAEESG LIVQIGEWVR TQALTSIIAL QKSGYAIPFA INVSTIEFWT SDLQQRFLNY
FDNISEALGG EIPYQLITLE ITESLMMKQQ SSISQLLTEL RHRGMQISVD DFGTGYSSLS
YLANFPVDQV KIDKSFIQKI SLGARHEALI EAIVSMSRAL DLSIVAEGVE TEVELNFIKK
QNIEAVQGYY FYKPMPKNDF FDLLAKQSRI F
|
|---|
| |