| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1791 |
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| Symbol | |
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| ID | 4277430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2109269 |
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| End bp | 2111542 |
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| Gene Length | 2274 bp |
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| Protein Length | 757 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638134575 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_750479 |
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| Protein GI | 114562966 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0171198 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTTAG GAACAAATAG TAATATAAAA GTGACGGCTG AATTACCCTC AATTAGTTCT
CAGCAATCGA GTATTGAACG TTATAGCACC ATTTTAGATA TGGTGCTGCA GGGATTACCT
CTCGGCGAAA TACTTAACGC AATTGTATTA CTTATAGAAG CCCAAAAAAT GGGCACATTT
GCTTCCGTAT TATTGCTTAG CGATGATGGT AAAAGACTAT TATTAGGTGC AGCACCAAAT
TTCTCTGAAG TTTACACGCA CGCCATTAAT GGTATTGAAA TTGGCCCGAA TGCAGGTTCT
TGTGGTGCTG CAGCATTCAC GCGTGAACGT GTTATTGTTG CAGATATTGA AAACCATCCA
AATTGGCAGC CATTCAAATC AATACCACTG AATGCAGGTT TGCGAGCTTG TTGGTCTGAG
CCAATAAAAG ATAGCAAAAA TAACGTGCTC GGCACGTTCG CTATGTACTA CGACAAAGTT
AAATCACCAA TTGAACAAGA TCTGTATCTC ATTCAAGAGG CGGCTCGTTT AGCGAGTTTA
GCGATTGAGC GAAGCCGTGG AATGCATATT CAACGGTTAA GTAATAATAT TTTCAATAAT
TTGCCTATGG CATTAGTGAT TACCAATAAA GACAACTCTG TATTGTCGGC AAATCCAAAA
TTTGAAATGT TAACCACTTC GTATAATAAA GATCTTAAAT TATTTGATGT CCAACGTTTT
TTAAGTCAAT CAGCACCAGA AAAAGTGGCA GATTTGTTTA ATACAATCTC TCATGGTCAT
GCTTGGAAAG GTGAAATGAG AGGTTTAAGA TCTGACAATG ACATTATTTA TATAGACCTG
ACAGTGACGG TTATTCGAGA CTCTTTTACA CAACAAAATT GTTATGCTTG GCTTATTACG
GATATAAGTG CGCGTAAACA TGCTGCTAAA ACCATTGATT TTCAAGCTAA TCATGACCAT
TTAACGGGAT TAGTAAATCG AAAGTATTTA TTTGAACAGT TACAAATAAT GATCGAGGCT
ACACACGAAC AAGAGCATAT AAGCCAAAGC TTTAGTCTGT TGTTGATGAA TTTAGATCAT
TTTAAGCAAA TTAATGACAG TTTGGGGCAC GACTGTGGTG ATGCCGTTTT ACAAAAATTA
GCAAAACGCT TATTACAGAA TATTCCTGAC AATGCACTTT TATCACGTAT TGGTGCAGAC
GAATTCGTGC TGTTACTTCC TGGACGCATT GAAGCGGATA CTTTAATGGA GCTTGCCAGA
AAACTCAGTG ATATTTTAAG TAATAACATG ACAGTAGCAG ACCAAAACCT GATGTTGTCT
ATGAGTATTG GTTTATCTCG CTTTCCAGAT GATGCCAACA ATGTTGAGCA AATCTTAAAT
TGTGCTAGTC AAGCTATGTA CAATGCTAAA GCAAAAGGGC GCAATTGTTT TGAGTTTTTT
AACGATAAAA TTCAACAAGC TGCAGAACGA ACTGCTCAAG TGCATTTACA CTTAAAAAAC
GCCATTAGTA ATAATGAGTT TGAGTTATTT TACCAACCCA TTGTGAATCC CTTTACTGGT
CAAATTATCA AAGCTGAGGT GTTGCTTCGA TGGCTACATG ATGGCCAATT TATTTCTCCT
GAGGAATTTA TTCCCATTGC AGAAGAATCG GGATTAATTG TACAAATCGG AGAGTGGGTT
AGAACCCAAG CTGTGGTCTG TGCTATTGAA TTACAACAGC GTCAACTCCC ATTACCATTA
TCGATAAATG TATCTACTAT TGAGTTTTGG TCAAACGAAC TGCAGCAACG TTTTTTGAAT
TATTTTGATT CAATACAGCA ACAGTTCGAT TTAACGGTAT TCCCTTACGA ATTGCTCACG
TTGGAAATCA CTGAGTCACT AATGATGAAA CAACAGAGTA ATATTAATCT CTTACTAGAA
GAGCTTAGGC GTCGAGGTTT AAACATTTCG GTAGATGATT TTGGTACTGG TTACTCGTCA
TTATCTTATT TAGTTAATTT CCCAGTGGAT CAAATCAAAA TTGATAAGTC GTTTATTAAA
AAAATAGCAC AAGGTGAACG TCACAAAGCG ATAATTGAAG CTATTGTTAG TATGAGTCGC
GCGCTAGATT TATCGGTCAT TGCAGAAGGG GTTGAAACCC AAGCTGAACT TGATTTTATT
AAGGAGCAAC AGATCGATGC GGTACAAGGG TATTATTTTT ACAAACCTAT GCCAAAAAAT
GATTTTTTAA CATTATTGGC TGAACAACAG AATAAACTGT CTGATTTCAC ATAA
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| Protein sequence | MTLGTNSNIK VTAELPSISS QQSSIERYST ILDMVLQGLP LGEILNAIVL LIEAQKMGTF
ASVLLLSDDG KRLLLGAAPN FSEVYTHAIN GIEIGPNAGS CGAAAFTRER VIVADIENHP
NWQPFKSIPL NAGLRACWSE PIKDSKNNVL GTFAMYYDKV KSPIEQDLYL IQEAARLASL
AIERSRGMHI QRLSNNIFNN LPMALVITNK DNSVLSANPK FEMLTTSYNK DLKLFDVQRF
LSQSAPEKVA DLFNTISHGH AWKGEMRGLR SDNDIIYIDL TVTVIRDSFT QQNCYAWLIT
DISARKHAAK TIDFQANHDH LTGLVNRKYL FEQLQIMIEA THEQEHISQS FSLLLMNLDH
FKQINDSLGH DCGDAVLQKL AKRLLQNIPD NALLSRIGAD EFVLLLPGRI EADTLMELAR
KLSDILSNNM TVADQNLMLS MSIGLSRFPD DANNVEQILN CASQAMYNAK AKGRNCFEFF
NDKIQQAAER TAQVHLHLKN AISNNEFELF YQPIVNPFTG QIIKAEVLLR WLHDGQFISP
EEFIPIAEES GLIVQIGEWV RTQAVVCAIE LQQRQLPLPL SINVSTIEFW SNELQQRFLN
YFDSIQQQFD LTVFPYELLT LEITESLMMK QQSNINLLLE ELRRRGLNIS VDDFGTGYSS
LSYLVNFPVD QIKIDKSFIK KIAQGERHKA IIEAIVSMSR ALDLSVIAEG VETQAELDFI
KEQQIDAVQG YYFYKPMPKN DFLTLLAEQQ NKLSDFT
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