| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1790 |
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| Symbol | |
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| ID | 4277429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2107849 |
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| End bp | 2109063 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134574 |
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| Product | Fmu (Sun) domain-containing protein |
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| Protein accession | YP_750478 |
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| Protein GI | 114562965 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0241833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGACTT ATCCGTTGTC AGGCAGTTCA TCAGAGTTAG TCTTAAATGT GCTAACCATG
GTGTTAACCC GAGGAAAACC ATTAGATAGA GCTTATTCAG AGCATTTTTC TGGTTTAACG
CTTAACCCAT CAGAGCAAGC GCGGATCACG CAAGTCACCG GCGATATTTT ACGTCGTTTA
AACTTATATT GTTTTCTTGT TGATATTAAA CCAGAAGAAT TTGATCGTTT AGGGTCAAAA
TTACTTAACG GCTGGCATGT ATTTCATGGC TTAGATTTAC CTAAAATGCA GTATTCATTG
CAACTAGAGC AAGCAGCATT TGAGGCTAAT CTAGAACAAG CCAAAACAGA CCCTGTATTA
TGGGATGGTT GTCCTGAGTG GCTAAATGAG CTTGGTCAAG TACAATTGGG TGACAAGTGG
CCTGCTGAAC GTGCGGCACT GGCAGAGCAA CCAAAACGCT ATTTACGCGT TAATGAACTG
AAATGTAATC GCGACGCCCT TATTGAAAGA CTTAAAAAAG AAGGCGTAAC GGCAATAGAA
GTAAGCGATG TGGCTTCTGC TATTGAGGTC ACTTCAGACT CAGCATTATT TCGTACCGAT
GCATTTAAAG ACGGTTGGTT TGAACAGCAA GACGCTGGTT CACAATTAGT TGCTAATGCT
GTTGATGCAA AACCAGGTAT GCGTGTTGTT GATGCTTGTG CAGGTGCGGG CGGTAAAACC
TTGCATATTG CGGCACAAAT GCAAGGTAAG GGCCGTTTGC TCGCGATGGA TATTGAGCAA
TGGAAACTGG ATAATCTTAA AACTCGCGCT AAACGTGCAG GTGCCCATAA CGTTGAAACG
CGGATTATTG CCAGTTCAAA AACCATTAAA CGCTTAAAAT TAACCGCTGA CCGTGTGCTA
TTAGATGTAC CTTGTTCTGG ACTTGGTGTG CTAAAACGCA ATCCAGATTC AAAGTGGCGT
GATACTCCTG AGCGTTTGCC TGTGTTGGTT GAATTGCAGA AGCATATTTT GCAAAGTTAC
AGCCGTATGG TCAAAGTCGG TGGGATATTA ATTTATGCGA CTTGTTCAAT CATGCCTGAA
GAAAATCGCG ATCAAATTGA TGCATTTCTG GCAGACAATC CACAGTTCAC GCTAATCGAA
GATGAAAACA TCTTGGTTTC AGAGCGCGGA TTTGATGGTT TCTATCTTGC CAAGATGGAA
CGAATAGCTG AATAA
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| Protein sequence | MLTYPLSGSS SELVLNVLTM VLTRGKPLDR AYSEHFSGLT LNPSEQARIT QVTGDILRRL
NLYCFLVDIK PEEFDRLGSK LLNGWHVFHG LDLPKMQYSL QLEQAAFEAN LEQAKTDPVL
WDGCPEWLNE LGQVQLGDKW PAERAALAEQ PKRYLRVNEL KCNRDALIER LKKEGVTAIE
VSDVASAIEV TSDSALFRTD AFKDGWFEQQ DAGSQLVANA VDAKPGMRVV DACAGAGGKT
LHIAAQMQGK GRLLAMDIEQ WKLDNLKTRA KRAGAHNVET RIIASSKTIK RLKLTADRVL
LDVPCSGLGV LKRNPDSKWR DTPERLPVLV ELQKHILQSY SRMVKVGGIL IYATCSIMPE
ENRDQIDAFL ADNPQFTLIE DENILVSERG FDGFYLAKME RIAE
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