| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1787 |
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| Symbol | |
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| ID | 4277426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2101253 |
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| End bp | 2103973 |
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| Gene Length | 2721 bp |
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| Protein Length | 906 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638134571 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_750475 |
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| Protein GI | 114562962 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGCTAT TTAAACCGAG CCTACTTACG CTAGCGTTAG TTGCTGCAGG TGCAAGCATG
AGTGCTTACG CTGCGGATGA CGTTAATACT ACGGAAACTG CCGAAGAAAA TATCGAAGTG
ATTCAAGTCA CTGGTATTCG TCGCAGTTTA CAAGAGTCAC AATCACTAAA AATGTCTTCA
TCATCCATTG TTGAAGCTAT TTCTGCCGAA GACATTGGTA AATTACCAGA TGTTAGTATT
GCAGAGTCAC TCGCCCGCTT ACCTGGTGTA TCAGCACAAC GTTTAGATGG ACGTGCAAAC
GTTATCTCTA TCCGTGGTTT AGGCCCAGAT TTCACTACCG CGACATTAAA CGGTCGCGAA
CAAGCTTCGG TTAACGACAA CCGTGGTGTT GAGTTTGACC AATACCCTTC TGAATTATTA
AATCGTGTTG TTGTGTACAA AACACCAGAT GCTTCTGTAA TGGCACAAGC CATTGGCGGC
ACGGTAGATA TGCAAACTAT TAGCCCATTA ACCCATGGCG AGCAAACTAT TGCGATGTCG
CTTCGTGGCG AAATGAACGA CTTAGGTTCA CTTAACAGTG GCTCAAGTGA CACTGGTTAT
CGTGGCAGTA TTTCATACAT CGACCAGTTT GCAGACGACA CTATCGGTAT TGCGTTAGGT
TATGCCCGCA TGATGTCACC AAACCAAGAA GAACGCTGGC AGGCATGGGG TTATCCAGAA
AATGATGCTG GAGACAGTGT TTTAGGTGGC GCAAAACCAT TTGTGCGTTC AAGTGAATTA
GAACGTGATG GTATATTAGC TGTATTTGAA TACGCACCTA ACGAAAAATT CACTTCAGTT
GTTGATATTT ACTATACAAA GTTCACTGAT GACCAGCGTT TACGTGGTAT CGAAATTCCT
GCTGCTTGGG GCACTAACGG TGGTGTCACC TCGACAACAA CCGAAGCTGG TTTAGTGACC
CAAGGAACCA TTAATGGCGC CGAAGTCGTT ATCCGTAACG ATGTCAACAA ACGTGATGCT
GAATCACTGT CAATTGGCTG GAACAACAAG TTCACCATCA ATGACAATTG GAGCGTTGAA
GCTGATATCG CTTTATCAAA AGCTGAACGT ACCGATATTG GTATGGAAAG TTATACCGGT
ACAGGCCGTG GCACCGGTGT TGGCGCAGTT GATGACCTAG GTTTTAACTA CAATGGTAAT
GGCGGTTATA ACTTTACCCA TGACCTTAAT TATGCCGATC CTAATGTCAT CAAATTAGGC
GACCCACTTG GTTGGGGTAG CCCACTTGGT GCCAATACTC AAGACGGTTT TATCAACAAG
CCAGAAATTG ATGATGAGCT TAAATCATTC CGTTTAAGCG CAGAATATGT GTTTGATGAC
GGTGCCGTGC GCAGCGTTGA GTTTGGTGTT AACCGCACAA ATCGCGATAA AAGCAAGCTT
GATAAAGGTT ACTATCTAAC GTTGGCCGGT TATGACGGTT CTGATGACTA CTTAGAAACC
GTACCAGAGC AATACTTATT ATCGCCAACC TCGCTCGATT TCTTTGGCAT GGGTGATGTA
CTGAGTTATG ACTCGCTAGC GTTTTATAAC GATGGTGGTT ATACCGAAAC AGACGTTGCT
GATGTAGATT TATCACGTGC GACAAACTCT TGGGCAGTAT CAGAAGAAGT CTCTACTTTT
TATGTTAAAA CCAACCTAGA GTCAGAATTA TTTGGTTTTC CATTAACCGG TAACGTCGGC
ATTCAAGCTG TACACACAGA CCAAAGCTCA GACGGTACTG TGGCGACAGT TGAAAACGGT
GTAGTGACAT TAACGCCTCG TACTGCTGGT GATTCATACC TTGAATGGTT ACCTAGCATG
AACTTAGGTT TTGAAGTTGC CGATGGTCAA ATGTTGCGTT TTGCTGCTGC GCGTACGTTA
ACTCGTGCTC GTATGGATAA AATGAACGCT AACGTTAACT TTAGCTACAA CCAAAACCCA
AATGACGGTG TTAACTGGTC AGGTGGTGCA GGTAATCCTG AGCTACGTCC ATGGTTAGCG
CGTCAATACG ACATAAGCTA TGAAAACTAC TTTAGTGACC AAGGTTATTT CTCCGTAGCT
GTTTTCTATA AAGACTTAGA AAACTACGTT TATGATCAAC AAACTAACTT TGATTTCAGC
ACTATTTTGC CACAAAACCC AGGTGACAAC CCAATTGGGA ATGTCAGCCA ACCTCAAAAC
GGTAATGGCG GTTATGTACA AGGTATTGAA GCATCATTAT CAATCGACTT TGGTTTGTTT
GCTGATTCTC TAAGTGGTTT TGGTACCATC TTAAGTGGTT CATACAACGA CAGCGAAGTG
AAAGAAACGT CAGACAGTGA TCCATCGACT CTGCCAGGCC TTTCTGAAAA AACCTTCAAT
GCCACTGTTT ACTATGAAAA CTCTGGTTTT GAAGCACGTA TCAGCTCACG CTATCGTAGT
GACTTCTTAG GTGAAGTAAC TAAAATCAGT CTACAGCGTG AAAACGTTAA CATAAAAGCT
GAAACTGTTG TTGATGCACA AATTGGTTAT GACTTTACTG AAAGCGGTAT CGATGCCCTA
TACGGTTTAT CGGTGCAGTT CCAAATAAAC AACTTAACTA ACGAGCCATT TACATCGTAC
ACAGGTGATG ATCAACGTTT AGTACGTGAT TATCAAAACT ACGGTCGTAA CTTTATGTTA
GGCGCAAACT ACAAGTTCTA A
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| Protein sequence | MLLFKPSLLT LALVAAGASM SAYAADDVNT TETAEENIEV IQVTGIRRSL QESQSLKMSS
SSIVEAISAE DIGKLPDVSI AESLARLPGV SAQRLDGRAN VISIRGLGPD FTTATLNGRE
QASVNDNRGV EFDQYPSELL NRVVVYKTPD ASVMAQAIGG TVDMQTISPL THGEQTIAMS
LRGEMNDLGS LNSGSSDTGY RGSISYIDQF ADDTIGIALG YARMMSPNQE ERWQAWGYPE
NDAGDSVLGG AKPFVRSSEL ERDGILAVFE YAPNEKFTSV VDIYYTKFTD DQRLRGIEIP
AAWGTNGGVT STTTEAGLVT QGTINGAEVV IRNDVNKRDA ESLSIGWNNK FTINDNWSVE
ADIALSKAER TDIGMESYTG TGRGTGVGAV DDLGFNYNGN GGYNFTHDLN YADPNVIKLG
DPLGWGSPLG ANTQDGFINK PEIDDELKSF RLSAEYVFDD GAVRSVEFGV NRTNRDKSKL
DKGYYLTLAG YDGSDDYLET VPEQYLLSPT SLDFFGMGDV LSYDSLAFYN DGGYTETDVA
DVDLSRATNS WAVSEEVSTF YVKTNLESEL FGFPLTGNVG IQAVHTDQSS DGTVATVENG
VVTLTPRTAG DSYLEWLPSM NLGFEVADGQ MLRFAAARTL TRARMDKMNA NVNFSYNQNP
NDGVNWSGGA GNPELRPWLA RQYDISYENY FSDQGYFSVA VFYKDLENYV YDQQTNFDFS
TILPQNPGDN PIGNVSQPQN GNGGYVQGIE ASLSIDFGLF ADSLSGFGTI LSGSYNDSEV
KETSDSDPST LPGLSEKTFN ATVYYENSGF EARISSRYRS DFLGEVTKIS LQRENVNIKA
ETVVDAQIGY DFTESGIDAL YGLSVQFQIN NLTNEPFTSY TGDDQRLVRD YQNYGRNFML
GANYKF
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