| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1784 |
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| Symbol | |
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| ID | 4277423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2095550 |
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| End bp | 2097580 |
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| Gene Length | 2031 bp |
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| Protein Length | 676 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134568 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_750472 |
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| Protein GI | 114562959 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.519611 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCTTCA ATAGAACCAC TCCCATAAAA ATAATAAAAG AGAGACTCAT GGGCACCATC
ATTAAACCGT TAGCAAGCCA ACTTCACCGA CCTTCCCCAA CCTCTAAGGC ATTGGTACTA
GCCAGTATGC TGGGATTAGG ATTAAGCGCT TGCCAACCCA ATACCGTTGA ACAAACTGAT
ACTGCGGTAA AAAACGATAA CGAAAACGTA TCAGTTACTC AAATAAACCA AACTGCTACA
ACAGCCAAAC CGGTGGTATA TCAAGTATTC ACTCGCCTGT ATGGCAACAC CAATACCACC
AATAAAGCTT GGGGAACTAT TGCCGAAAAT GGCGTAGGAA AATTCAGTGA TTTTACCGAT
GTGGCATTAC GAGATATTAA ATCCTTAGGC ACCACTCACG TTTGGTATAC CGGCGTACCG
CATCATGCGT TGGTCAATGA CTATACGGAT GATGGTATTA GTAATGATGA TCCTGATGTG
GTAAAAGGCC GCGCGGGCTC ACCATATGCG GTAAAAGACT ACTACAACGT TAATCCAGAT
TTAGCTGATA ATCCGGCTAA TCGCTTGGCA GAATTCGAAG CCTTAATCGG TCGTACTCAT
GCCAATGGCA TGCAGGTAAT TATCGACATA GTGCCTAATC ATGTCGCGCG CAATTATCAT
TCTATTTCAG CGCCAAAAGG CGAGCCAGAC TTTGGTGCTA ACGACGATAA AACTAACACC
TATAGTAGAC ACAACAATTT CTATTATGTG GTCGGTGAAG ACTTTCAAGT CCCACAAGCA
TCGGATGGTT ATCTGCCATT AGGCGGCGAA ACACATCCCC TCATCGACGC AAAGTTTGCC
GAGTCACCGG CAAAATGGAC CGGCAACGGC TCACGTTTAG CCAAGCCCGA TGCTAACGAT
TGGTACGAAA CCGTTAAAAT AAATTACGGA GTCAAACCCG ATGGCAGCCA TGACTTCCCT
GCACTGCCTA ATGATTATGC AAATAAAACC GCAGCCGAGC ATTTAGCCTT TTGGCAAGCA
CAAGCGGCCG ATGACATTCC AGATTCATGG CGTAAGTTTG AGCACATCGC CCAATATTGG
CTAGCCAAAG GCGTAGATGG TTTTCGCTAC GACATGGCTG AAATGGTACC AGTTGAATTT
TGGAGTTACC TCAACAGCCA CATTAAGCAC ACCAACCCAA ATGCGTTTAT TCTGGCTGAG
GTGTATAACC CCGATTTATA TCGCGATTAT ATTCATTTAG GTAAAATGGA TTACTTATAC
GACAAAGTCG ATTTATATGA CACCTTAAAA GCCATAATTC AAGGTAAGGC CAGTACAGCA
GCCATTGCCA CAGTTCAAGC CAAAGTCAGC GACATCGATC AGCATATGCT GCATTTTTTA
GAAAACCACG ACGAACAACG CATCAACACA GCCGACTTTG CTCGAAATCC ATTTAATGCA
CTGCCAGCGA TGGTGGTGTC TGCAACGTTA AGTCGCTCTC CCACCTTACT GTATTTTGGT
CAAGAAGTAG GTGAATCAGG CGCTGAAAAT GCAGGCTTTG GACAACCGAC TCGCACCAGT
ATTTTTGATT ATGTTGGCGT GCCTGCTCAT CAACGCTGGA TGAACAACGG CAAGTTTGAT
GGCGGACAGT CAACATCTAA GGAAAAGACA TTACGCGCTT ATTATCAAAC ACTGCTTAAC
TTAAGCCACA CAGCAACGGC ACTAAGCGGT GAATATAGGG AACTAGATAG ACTACAGCGC
CAAAATAAGG TTGTGGGTTA TGACGACAGC GTCTTTGCTT TTAGTCGTTT TAGCGATACT
CAGCAATTGA TTATTGTCAG TAACTTTAGT CAAGTCCAGG GCAAACAATT TACCCTTGAG
CTACCAAGCT CACTAATACA AGCTTGGCAT CTTTTGGAAA ATGCAAAACT GACAGATTTA
CTGAAAAACG CTCAACTCAA TCAGCAACTC ATATTGAATA AAGATGGCAG TGCTAGTGTT
AACATTGAAC TATCCCCTTT ACAGTCTGTG ATTCTTGGAG TAAATAAATA A
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| Protein sequence | MFFNRTTPIK IIKERLMGTI IKPLASQLHR PSPTSKALVL ASMLGLGLSA CQPNTVEQTD
TAVKNDNENV SVTQINQTAT TAKPVVYQVF TRLYGNTNTT NKAWGTIAEN GVGKFSDFTD
VALRDIKSLG TTHVWYTGVP HHALVNDYTD DGISNDDPDV VKGRAGSPYA VKDYYNVNPD
LADNPANRLA EFEALIGRTH ANGMQVIIDI VPNHVARNYH SISAPKGEPD FGANDDKTNT
YSRHNNFYYV VGEDFQVPQA SDGYLPLGGE THPLIDAKFA ESPAKWTGNG SRLAKPDAND
WYETVKINYG VKPDGSHDFP ALPNDYANKT AAEHLAFWQA QAADDIPDSW RKFEHIAQYW
LAKGVDGFRY DMAEMVPVEF WSYLNSHIKH TNPNAFILAE VYNPDLYRDY IHLGKMDYLY
DKVDLYDTLK AIIQGKASTA AIATVQAKVS DIDQHMLHFL ENHDEQRINT ADFARNPFNA
LPAMVVSATL SRSPTLLYFG QEVGESGAEN AGFGQPTRTS IFDYVGVPAH QRWMNNGKFD
GGQSTSKEKT LRAYYQTLLN LSHTATALSG EYRELDRLQR QNKVVGYDDS VFAFSRFSDT
QQLIIVSNFS QVQGKQFTLE LPSSLIQAWH LLENAKLTDL LKNAQLNQQL ILNKDGSASV
NIELSPLQSV ILGVNK
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