| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1773 |
|---|
| Symbol | |
|---|
| ID | 4277552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2081283 |
|---|
| End bp | 2082215 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638134557 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_750461 |
|---|
| Protein GI | 114562948 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2354] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.367738 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGTG CCAGTTTATT AACTCTATTA GATGATATTG CGACTATTTT GGATGATGTA
GCGGCCATGA GTAAAGTGGC TGCACGTAAA ACAGCGGGCG TTCTGGGTGA TGATTTAGCC
TTAAATGCGC AACAAGTGTC GGGTGTTGCG TCTGAGCGTG AACTACCGGT GGTATTTGCG
GTAGCGATGG GATCATTTAA AAATAAAGTG ATTTTAGTGC CGATGGCCAT GTTGATCAGC
GCGTTTATTC CATGGGCTAT AACGCCTTTA TTGATGTTTG GTGGTTTGTT TTTGTGTTAC
GAGGGTTTTG AAAAAGTCTA TCATTCACTA ACACATAAAC GCGCTCCTGT GATCGATGAC
GATGCGGTAG TCGCCAAAGC AAAAGCGGAT ATCGAAGACT TAGCTGCATT CGAAAAAGAA
AAAATAAAAG GCGCTATTCG TACCGACTTT GTCTTATCAG CTGAAATTAT CGCAATTAGT
TTAGGCGTGG CAGCACACAT GGATCTAATG GGGCAATTTT TAACCTTATG CGTTATTGCC
ATTGTGATTA CGGTCGGGGT GTACGGCTTA GTGGCAGGGA TTGTTAAAAT CGATGATCTT
GGTTTGTATC TTGCTCAGCG TAAACCGAGT GGAATAGGGC ATAAATTAGG CCTAGGATTA
GTATCTGCTG CTCCTTATCT AATGAAAATC CTGACATTTG TCGGCACTAT TGCCATGTTT
ATGGTCGGTG GCGGTATTTT AACTCATGGA ATTCATGTGG TGTCTGAATG GATTTTGCAT
GCTGAAACGC TGGTTAGCCA AGTGAGTGTT GTTGGTGACG TTTTAGGACT ATTAACCCCA
AGCGTGTTGA ATGCACTATT TGGTGTTGTT GCTGGTGGTT TAGCGGTATT ATTGATGAAT
GGTGTGACCA AGTTACTGCC TGCAAAAGAT TAG
|
|---|
| Protein sequence | MAGASLLTLL DDIATILDDV AAMSKVAARK TAGVLGDDLA LNAQQVSGVA SERELPVVFA
VAMGSFKNKV ILVPMAMLIS AFIPWAITPL LMFGGLFLCY EGFEKVYHSL THKRAPVIDD
DAVVAKAKAD IEDLAAFEKE KIKGAIRTDF VLSAEIIAIS LGVAAHMDLM GQFLTLCVIA
IVITVGVYGL VAGIVKIDDL GLYLAQRKPS GIGHKLGLGL VSAAPYLMKI LTFVGTIAMF
MVGGGILTHG IHVVSEWILH AETLVSQVSV VGDVLGLLTP SVLNALFGVV AGGLAVLLMN
GVTKLLPAKD
|
|---|
| |