| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1759 |
|---|
| Symbol | |
|---|
| ID | 4277538 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2067061 |
|---|
| End bp | 2067798 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638134543 |
|---|
| Product | 3-deoxy-manno-octulosonate cytidylyltransferase |
|---|
| Protein accession | YP_750447 |
|---|
| Protein GI | 114562934 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1212] CMP-2-keto-3-deoxyoctulosonic acid synthetase |
|---|
| TIGRFAM ID | [TIGR00466] 3-deoxy-D-manno-octulosonate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.183972 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTA CTCTATTAAT CCCGGCACGT TATGGTTCAA GCCGTTTCCC GGGCAAGCCG
CTAGCCCCGA TTAATGGTAA ACCCATGATC CAACACGTTT ATGAACGTGC ATCATTAGCA
AAAGGTCTCG ATAGCATCTA TGTTGCTACA GATGACGACC GCATTAAAGA TGCCGTTGAA
TCCTTTGGTG GTAAAGTGGT AATGACCAGC CCTGATGCAG CATCTGGTAC CGACCGTATT
AACGATGCCA TTGCATTACT GGGTCTTAAT GATGACGATT TAGTGATTAA TTTACAAGGC
GATCAACCGC TGATTGATCC TATCTCAATC GAACAAATCA TTAGTCTATT TGAACGTCAC
CCTGGTGAAT TCGAAATGGC AACATTAGGA TTTGAGATCG TCGATAAAAG AGAATTAGAC
GACCCAATGC ACGTTAAAAT GGTGTTTGAT AATGACCATA ATGCATTATA TTTCTCTCGC
TCTCGTATTC CCTTTGGTCG CGATACCAAT GACTATCCGG TTTACAAACA TTTAGGTGTT
TATGCTTACA CTAAGCGTTT TGTGAATGCC TTTGCTAAGT TGCCTTTAGG CAGACTTGAA
GATCTCGAAA AATTAGAACA GCTACGCGCA CTCGAATACG GCCACAAAAT TAAAATTGCT
ATCAGTGCTT TTGATTCTCC AGAAGTCGAT ACTCCAGAAG ATATTCGCAA ATGTGAGCTA
CGTTTAGCCG TCGACTAA
|
|---|
| Protein sequence | MKVTLLIPAR YGSSRFPGKP LAPINGKPMI QHVYERASLA KGLDSIYVAT DDDRIKDAVE
SFGGKVVMTS PDAASGTDRI NDAIALLGLN DDDLVINLQG DQPLIDPISI EQIISLFERH
PGEFEMATLG FEIVDKRELD DPMHVKMVFD NDHNALYFSR SRIPFGRDTN DYPVYKHLGV
YAYTKRFVNA FAKLPLGRLE DLEKLEQLRA LEYGHKIKIA ISAFDSPEVD TPEDIRKCEL
RLAVD
|
|---|
| |