| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1746 |
|---|
| Symbol | |
|---|
| ID | 4277525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2053556 |
|---|
| End bp | 2055490 |
|---|
| Gene Length | 1935 bp |
|---|
| Protein Length | 644 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638134530 |
|---|
| Product | putative serine protein kinase, PrkA |
|---|
| Protein accession | YP_750434 |
|---|
| Protein GI | 114562921 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2766] Putative Ser protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00635815 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCATTT TTGAACACTA TCAACAACGT TATGAGAAAA AACGCGACGA AGAATATACC
TTAGAGCAAT TCCTCGACAT CTGTAAACAA GACAGAAGTG CTTATGTGTC TGCGGCTGAA
CGGTTACTCA TGGCCATTGG TGAACCGCAG ATTATTGACA CTGCAAAAAA TCCAATTTTA
AGTCGAATTT TTTCTAATCG TGTTATTGCA CAGTATCCCG CATTTAAAGA TTTTTATGGC
ATGGAAGATG CGATTGAACA AATCGTGGCC TACTTAACAC ATTCAGCTCA AGGCCTTGAA
GAGTCAAAGC AAATATTATA TCTCTTAGGT CCTGTCGGTG GCGGTAAATC ATCGTTGGCC
GAAAAACTCA AAGCATTAAT GCAGCAAGTA CCGATTTACA TATTAACTGC CGATGGCATT
CGCAGCCCTG TCAACGACCA CCCATTTTGT CTGTTTGATC CTGAAGAAGA CAGTGAACTA
CTCAAAAACG AATACAACAT CCCAAGTCGT TATATCAAAA CGATTATGTC ACCATGGTCT
GTAAAACGTT TACACCAATA TGGTGGTGAT ATATCAAAAT TCAGAGTTGT TAAAGTGTAC
CCATCGGTGC TCGATCAAAT CGGTATTGCT AAAACAGAAC CTGGAGATGA AAATAACCAA
GATATTTCTG CTTTGGTGGG TAAAGTTGAT ATTCGTCAGT TAGAGCATTT TTCTCAAGAT
GATGCCGATG CTTATGCTTA CTCAGGTGCG TTATGTCGTG CAAACCAAGG ATTAATGGAG
TTTGTTGAAA TGTTTAAAGC ACCCATTAAG GTACTTCACC CATTATTAAC TGCGACTCAG
GAAGGCAATT ACAACGGTAC TGAAGGCCTG TCAGCCTTGC CGTACAACGG TATTATTTTG
GCCCATTCGA ATGAGTCTGA ATGGTCCGCG TTTAGGAATA ATAAAAACAA CGAAGCATTT
TTAGATCGCG TCTATATCGT CAAAGTGCCC TACTGTTTAC GGGTATCTGA AGAAATGGAA
ATTTACCAAA AACTATTAGC CAATTCTGAA CTATCGACGG CATCTTGTGC ACCTGGCACC
TTAGAAACCC TGGCACAATT TAGCGTGTTA TCACGGTTAA AAGTGCCCGA AAACTCCTCT
ATTTATTCAA AAATGCGCGT CTATAACGGT GAAAGCTTAA AAGACACCGA TCCAAAAGCA
AAATCCTACC AAGAATATCG TGACTATGCT GGCGTAGATG AAGGCATGCA AGGGCTATCG
ACCCGCTTTG CATTCAAGAT TTTGTCACGT GTATTTAATT TTGACAGTGC AGAAATAGCC
GCAAACCCAG TCCACTTATT TTATGTACTC GAAAAGCAAA TTGAACAAGA ACAATTTCCT
AACGATATAA GTGAGAAATA TTTAGAGTTT CTTAAAGGTT ATTTAATCCC TAAGTATGTT
GAGTTTATCG GTAAAGAGAT CCAAACAGCT TACCTTGAGT CGTATTCTGA ATACGGACAA
AATATTTTCG ACCGATATGT TACCTATGCA GATTTTTGGA TCCAAGATCA AGAATATCGC
GACCCAGAAA CAGGACAACT TTTTGATCGT GGTGCCTTAA ATGCCGAATT GGAGAAAATT
GAAAAACCAG CGGGGATAAG TAATCCAAAA GATTTCCGCA ATGAAATTGT TAACTTTGTC
TTACGTGCTC GAGCCAATAA TGAAGGTAAT AATCCTCTGT GGACTAGCTA TGAGAAATTA
CGCACAGTGA TTGAGAAAAA AATGTTTTCC AACACTGAAG ATTTACTGCC TGTGATTTCG
TTTAATGGCA AAACATCGAA TGACGATCAG CGTAAGCATG ACGACTTTGT TAATCGCATG
ATGGAAAAAG GCTACACAAA AAAACAAGTC AGACTATTGT CAGAATGGTA TTTACGAGTG
CGTAAATCTT CGTAG
|
|---|
| Protein sequence | MGIFEHYQQR YEKKRDEEYT LEQFLDICKQ DRSAYVSAAE RLLMAIGEPQ IIDTAKNPIL
SRIFSNRVIA QYPAFKDFYG MEDAIEQIVA YLTHSAQGLE ESKQILYLLG PVGGGKSSLA
EKLKALMQQV PIYILTADGI RSPVNDHPFC LFDPEEDSEL LKNEYNIPSR YIKTIMSPWS
VKRLHQYGGD ISKFRVVKVY PSVLDQIGIA KTEPGDENNQ DISALVGKVD IRQLEHFSQD
DADAYAYSGA LCRANQGLME FVEMFKAPIK VLHPLLTATQ EGNYNGTEGL SALPYNGIIL
AHSNESEWSA FRNNKNNEAF LDRVYIVKVP YCLRVSEEME IYQKLLANSE LSTASCAPGT
LETLAQFSVL SRLKVPENSS IYSKMRVYNG ESLKDTDPKA KSYQEYRDYA GVDEGMQGLS
TRFAFKILSR VFNFDSAEIA ANPVHLFYVL EKQIEQEQFP NDISEKYLEF LKGYLIPKYV
EFIGKEIQTA YLESYSEYGQ NIFDRYVTYA DFWIQDQEYR DPETGQLFDR GALNAELEKI
EKPAGISNPK DFRNEIVNFV LRARANNEGN NPLWTSYEKL RTVIEKKMFS NTEDLLPVIS
FNGKTSNDDQ RKHDDFVNRM MEKGYTKKQV RLLSEWYLRV RKSS
|
|---|
| |