Gene Sfri_1733 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1733 
Symbol 
ID4277512 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2040345 
End bp2042018 
Gene Length1674 bp 
Protein Length557 aa 
Translation table11 
GC content41% 
IMG OID638134517 
Productlong-chain-fatty-acid--CoA ligase 
Protein accessionYP_750421 
Protein GI114562908 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.667013 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGACCAGC CTTGGATTAA TAATTTACCT GAACATGTTC CGGCCGAAAT CGACCCATCT 
CAATTCAGTT CTTTAGTACA CATGTTCGAA GATGCAGTAG CAAAATATGC TGACCAACCT
GCATTTATTA ACATGGGTGC GACGATGACG TACCGTAAAC TCGAAGAGCG AAGCCGAGCA
TTTGCTGCAT ATTTACAAAA CGAACTGCAC TTAAATAAAG GCGACCGTGT TGCCATTATG
ATGCCTAATT TGCTGCAATA TCCTATTGCT CTGTTTGGTA TTTTACGTGC GGGAATGGTA
GTGGTTAACG TTAACCCACT GTATACGCCA CGGGAATTAA AACATCAATT AGTAGATTCG
GGTGCAAGAG CCATCATTGT GGTGTCTAAC TTTGCTAATA CCCTAGAAGA AATTGTTGAT
CAAACTCCAA TAGAATCAGT CATTATTACT AATCTTGGTG ATCAACTCAG TGCACCTAAA
CGCACTTTAG TTAATTTTGT TGTTAAATAC ATTAAAAGAT TAGTGCCAAA ATATCATTTA
CCTCATGCAT TATCATTTCG CGATGCACTC TCTAAAGGCC GACGCCTACA GTACATTAAA
GCCGATATTA GTGGCGAGGA TTTGGCTTTT TTACAGTATA CCGGTGGAAC GACAGGGGTA
TCTAAAGGTG CCATGTTAAG CCATAAAAAC GTAGTAAGTA ACGTTTTACA AGCTAGTGGT
GCTTATTCGC CAGCGCTTGA TGATGGTGCT GAGTTTGTGG TGACAGCATT GCCTCTGTAC
CATATTTTTG CCCTAACAGT GAATTGTTTA TTGTTTATAC ATAAAGGTAG CAAAAATTTA
CTGATCACTA ACCCTCGCGA TATCCCAGCA TTTGTGGGTG AATTGAGAAA GTACCCGTTT
ACGGTATTAA CGGGTGTTAA TACCTTATTC AATGCTTTAG TGAATAACGA AGAATTTACT
CAACTTGATT TTTCTGGTTT AAAGTTGTCT ATTGGCGGCG GGATGGCGGT GCAGCGCGCC
GTAGCTGATA AATGGCAAAA CCTAACTAAG ACACGCCTAC TCGAAGGTTA TGGTTTAACT
GAAGCCTCAC CATTGGTCAC ATGCTGCCCA TATAACCTCA GTGGTTACAA TGGTTCAATT
GGCTTTCCTG CGCCTTCAAC GTTCATTCAA ATACGTGATG ATGATGGCAA AGTTCTAGCC
CAGGGCGAAA CTGGTGAATT ATTTGCTAAA GGCCCACAAG TGATGCAAGG TTATTGGCAG
CGTCCGGAAG AAACGGCGAG TGTCATTGAC AAAAACGGTT GGTTAGCTAC AGGTGATATT
GGTTATATGG ATGAAAAAGG TTTCTTTTTC ATTGTCGATC GTAAGAAAGA TATGATTTTA
GTGTCAGGTT TTAATGTATT CCCGAATGAA GTGGAAGAGG TTGTTGCATT ACATCCTAAA
GTTATCGAAG TCGCTGCGGT TGGCGTTCCT AACGATGCCA GTGGCGAATT AGTGAAGATT
TTTGTGGTAG CAAAAGACAA ATCATTAACC GAAGAAGAGC TGATTAAGCA CTGTCGTCAT
CATTTAACGG GATATAAAGT TCCTAAGCTG GTAGAATTTA GAGACGAATT ACCGAAAACC
AATGTGGGTA AAATTTTACG CCGACAACTT CGAGATGAAG TTAAGAAAGC GTAA
 
Protein sequence
MDQPWINNLP EHVPAEIDPS QFSSLVHMFE DAVAKYADQP AFINMGATMT YRKLEERSRA 
FAAYLQNELH LNKGDRVAIM MPNLLQYPIA LFGILRAGMV VVNVNPLYTP RELKHQLVDS
GARAIIVVSN FANTLEEIVD QTPIESVIIT NLGDQLSAPK RTLVNFVVKY IKRLVPKYHL
PHALSFRDAL SKGRRLQYIK ADISGEDLAF LQYTGGTTGV SKGAMLSHKN VVSNVLQASG
AYSPALDDGA EFVVTALPLY HIFALTVNCL LFIHKGSKNL LITNPRDIPA FVGELRKYPF
TVLTGVNTLF NALVNNEEFT QLDFSGLKLS IGGGMAVQRA VADKWQNLTK TRLLEGYGLT
EASPLVTCCP YNLSGYNGSI GFPAPSTFIQ IRDDDGKVLA QGETGELFAK GPQVMQGYWQ
RPEETASVID KNGWLATGDI GYMDEKGFFF IVDRKKDMIL VSGFNVFPNE VEEVVALHPK
VIEVAAVGVP NDASGELVKI FVVAKDKSLT EEELIKHCRH HLTGYKVPKL VEFRDELPKT
NVGKILRRQL RDEVKKA