| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1715 |
|---|
| Symbol | |
|---|
| ID | 4277494 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2022346 |
|---|
| End bp | 2023083 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638134499 |
|---|
| Product | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase |
|---|
| Protein accession | YP_750403 |
|---|
| Protein GI | 114562890 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0106] Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase |
|---|
| TIGRFAM ID | [TIGR00007] phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTATTC CTGCCATTGA TTTAATTGAC GGCCAAGTGG TGCGTTTATA CCAAGGTGAC
TACGACAAAC AAACCACCTT TGACTTAAGT CCACTGGCAC AGTTGCAATC TTATCAAGCC
CAAGGGGCAA AGCTGCTGCA TATCGTCGAC TTAACGGGAG CTAAAGATCC TAATAAACGC
CAAACTAAAT TGATTGCTGA ACTTGCTGCA GGGCTTGATG TTGATATTCA AGTGGGCGGT
GGTATTCGCA GCGAAGATCA AGTCGCAGAA TTGTTGGCCA TTGGTGTCAA ACGCGTAGTT
ATTGGTTCGC TTGCGGTTAA AGAACCTGAG CTGGTAAAAA GTTGGTTTGT AAAATACGGT
AGCGATGCTA TTTGTTTAGC GCTGGACGTT AACATCAATG ATAACGGCGA CAAGATTGTT
GCGGTATCGG GCTGGCAATC TGGTGGTGGT AAATCGCTAG AGTCATTAGT TGCTGAATTT
GAAACTGTCG GCCTTAAGCA TGCTTTAGTG ACCGATATCA GCCGTGACGG CACCTTAACT
GGCGCTAATA CTGAACTTTA CACTGAGTTA GCCGCGACTT ATCCAAATAT TCTGTGGCAA
GCCTCTGGCG GCATTGCCAC GCTCGATAAC GTCGCTGCGG TACGCGACAG CAAAGCATCG
GGTATCATTA TCGGTAAAGC ACTGTTGATT AATCAATTTA CCGTTGAGGA GGCAATACAA
TGCTGGCCAA ACGCATAG
|
|---|
| Protein sequence | MIIPAIDLID GQVVRLYQGD YDKQTTFDLS PLAQLQSYQA QGAKLLHIVD LTGAKDPNKR
QTKLIAELAA GLDVDIQVGG GIRSEDQVAE LLAIGVKRVV IGSLAVKEPE LVKSWFVKYG
SDAICLALDV NINDNGDKIV AVSGWQSGGG KSLESLVAEF ETVGLKHALV TDISRDGTLT
GANTELYTEL AATYPNILWQ ASGGIATLDN VAAVRDSKAS GIIIGKALLI NQFTVEEAIQ
CWPNA
|
|---|
| |