Gene Sfri_1711 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1711 
Symbol 
ID4277490 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2018945 
End bp2019925 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content40% 
IMG OID638134495 
Productlipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 
Protein accessionYP_750399 
Protein GI114562886 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1560] Lauroyl/myristoyl acyltransferase 
TIGRFAM ID[TIGR02208] lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTTTTT ACCGTGGGTC ACGGTCAGTT TATTTGGAGT TTCTTTTGGC ACGACAAGCA 
AAATATTTTG ATACTCGCTT TAATAAATCA TTATTGCATC CTCGTTACTG GGGAACATGG 
CTAGCTATCG CTGTGTTGTT TCTATTTGGC GTACTTCCCG CAAGCGTAAG AGATCCCATT 
GCGAGACTAT TGGCTCGAGT CGTGATGAAA GTGGCCAAAA AACCATTGCG AATAGCAAAG 
GTGAACATTA CCCATTGTTT TCCAGAAAAA TCAGCTGAAC AAGTCGATGA ATTAATCAAA 
AAAAATGTTG AGACATTTGT CATTACTTTG TTATCGCAAG CAGAGCTGCT TATTCGTTCT 
AACGCGCACC TTAAACGACG TATTCAACTT AACGGTTTTG AGCATGTTAA AGCAGCTCGA 
GATGCTAAGC AGCCGATTAT TTTCATCATG CCGCATGTAT GGCCGATGGA GTATGCAGGT 
CTTCGTATTA ACATGGAAAT ACCTTTAGTG ACTATGGCTA AGGCTCATCG CAATGGGTTA 
TTTAATTGGT TTAGCAATCG GATGCGCAGC AGTCAAAATG GTCGCGTGTA TATGCGTGAA 
GCAGGCATCA GAGCATTGTT AGCAGAGTTA AAAAATGATA ACAGTTTTTT CTATTTACCA 
GATGAAGACT TAGGCCCTGA ACAGAGTGTG TTTGCACCTT TTATGGGTAC TGTTAAAGCG 
ACTTTACCCG TAGTAGGGCG CTTAGCTCAA GCAGGTAACG CGCAAGTTAT GCCTGTTAAA 
ATTGGATACG ATCAACAAGC TAAACAATTT ATTATGACGG TGATGCCAGC GGTTAATCCT 
GATGAAATGA TTGGCAAAGA AAACGAAGCT ATCGCATTAA ACAAAGTCGT TGAGCAGGTC 
ATTAACGCTT ATCCAGAACA ATATATGTGG TTTTTAAAAT TACTCAAAAC TCGCCCTCCA 
GGTGAACAAG AATTTTACTA A
 
Protein sequence
MIFYRGSRSV YLEFLLARQA KYFDTRFNKS LLHPRYWGTW LAIAVLFLFG VLPASVRDPI 
ARLLARVVMK VAKKPLRIAK VNITHCFPEK SAEQVDELIK KNVETFVITL LSQAELLIRS 
NAHLKRRIQL NGFEHVKAAR DAKQPIIFIM PHVWPMEYAG LRINMEIPLV TMAKAHRNGL 
FNWFSNRMRS SQNGRVYMRE AGIRALLAEL KNDNSFFYLP DEDLGPEQSV FAPFMGTVKA 
TLPVVGRLAQ AGNAQVMPVK IGYDQQAKQF IMTVMPAVNP DEMIGKENEA IALNKVVEQV 
INAYPEQYMW FLKLLKTRPP GEQEFY