Gene Sfri_1702 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1702 
Symbol 
ID4277727 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2007982 
End bp2008620 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content43% 
IMG OID638134486 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_750390 
Protein GI114562877 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGATT TAAGTGATAT TCGCCGTGAA TATACCCAAG GTGGATTAAG ACGAGCGAAT 
TTGCCTGTTA ACCCAATGGA TCTATTCGAA CAATGGATGC AACAGGCAAA AGATGCCCAA 
CTTTCTGACC CGACGGCCAT GTGCGTCGCG ACGGTGGACG AAGATGGCCA ACCTTTTCAG 
CGTATTGTGT TACTAAAAAA GTTTGATGAT AACGGTTTTG TATTTTTTAC TAATTTAGAA 
AGCCGCAAAG CAAAACAGAT TGCCACTAAC AGTAAAATCA GTTTACTGTT TCCCTGGCAT 
CCACTAGAAC GTCAAGTGGC TGTATTAGGG GAAGCGGAGC CATTATCGAT GTTGGATGTG 
GCTAAATATT TTATGTCTAG ACCAAAAGAC AGCCAAATCG CTGCCTGGGT ATCTAAACAA 
TCAAGCAAGA TTAGCGCAAG GCAGGCTCTA GAAGGTAAAT TTGCTGAAAT GAAAGCTAAA 
TTTGCCCAAG GTGAGGTTCC ATTACCTAAG TTTTGGGGTG GATATTTAGT GCGACCAGCC 
AGCATTGAGT TTTGGCAGGG CGGTGAACAT CGGTTACACG ACCGATTTAT TTACACTAAA 
ACCGATGCGG ATTGGAATAT TGATCGGTTG GCACCTTAA
 
Protein sequence
MSDLSDIRRE YTQGGLRRAN LPVNPMDLFE QWMQQAKDAQ LSDPTAMCVA TVDEDGQPFQ 
RIVLLKKFDD NGFVFFTNLE SRKAKQIATN SKISLLFPWH PLERQVAVLG EAEPLSMLDV 
AKYFMSRPKD SQIAAWVSKQ SSKISARQAL EGKFAEMKAK FAQGEVPLPK FWGGYLVRPA 
SIEFWQGGEH RLHDRFIYTK TDADWNIDRL AP