| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1684 |
|---|
| Symbol | |
|---|
| ID | 4277710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1987074 |
|---|
| End bp | 1990952 |
|---|
| Gene Length | 3879 bp |
|---|
| Protein Length | 1292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638134469 |
|---|
| Product | phage tape measure protein |
|---|
| Protein accession | YP_750373 |
|---|
| Protein GI | 114562860 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3941] Mu-like prophage protein |
|---|
| TIGRFAM ID | [TIGR02675] tape measure domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTA AAGACCAAGT CATTAACCTG ATCATTCAGG GCAAAGATTT ATTTTCCAGT
GAAGCCAAGA AGTCTGAAAA AGCGGTTGCT GAATTAGCAT CACAAAGCGA AATCCTTAAT
GCCCGTTTAA AAGAGTTAGA AGATTTACAA GCGGCCGCCA ATTCAATTGA TGGTTTAACC
GCATCAATCA GTAAAGGCGA ACGTGCATAT AAAGATAACT CGGTTGCACT CGACAAGTTA
GTCACCGAAC AAAAGGCAGC AGTTAAAGAA TTAAAACAAC TTGAGGCTGC TCAAAAGGCG
GCTGAAGGTT CAACCAATCA ACTTGAGCAA GAATACAATC AAGCTCAAGC CGCATTAGTT
AAATATGAAA CCGAGCTACA ACAAGCCCGG GTTGAAGTAG CAAAGCTCAG TACCGAGCAA
CAACAAGGTG CCACGGCCAG CAAAGAACAA GCGACCGCAT TAACTAAAGC CAGTACCGAT
TTACAAAAAT TAACCAATGA ACAAACCAGC GCAAAAAATG CTGCCACCGA ACTGGCAACT
GCGTTAGATA ACCAGCGCCG AGATCTGCTT GAGGTTAGCA CCGCCACCGA AGCTGCTAGT
CGAAATAAAG CTGATTACAC ATTAAAGGTT AAAACTGCTC GCACCGAGGT AAACCAGCTA
GCGAGCAGTA TTAACAAAAA CAAAACTGAA TTAGACAAAA ACACTGCCAG TTTAAAAAAT
GCCGGCATCA GTACGGATAA GCTGGCAGAT GCCAGTAAAG AATTAAAGCA GCAACAAGTC
GCCGCTGAGA CAGCGTTAAG CGGTGTTAAT AACAAGCTTG AACGCCACAA TAAGTTATTA
ACAGAATCGA AAAAACAAGC CGGTGATTTT GGTGGCAGCA TTAAAAGTGC AACTGTCTCA
TTGGTTGCCA TGGCCGGAGC CTACATTGGT GTCGATAAGT TATGGGAAAG CCTAAAGTCG
ATCCTCACCG CAGGGGATGA AGCAAAAGCC TTTGGTGTGC AAATGAGCGC CATGATGGGC
AGTATTGCCA GTGGTGAACA AGCGACAAAA TGGATTAAAG ACTTTGCCAA TAATACCGGC
ACAAGGTTAG ATACTGCCAA ACAAGCCTTT GCCTCATTGA AAACATTTGG CATTGATCCA
ATGAATGGAT CATTGCAGTC GATGGTTGAT TACAATGCAC GTTTAGGTGG CAGCCAAGAA
AAATTAGAAG GGATTATTTT AGCGGTTGGC CAAGCATGGG CTAAGCAGAA ACTGCAAGGT
GAGGAAATCT TACAGCTGGT TGAGCGCGGC GTGCCCGTGT GGGACTTGCT TGAAAAAGTC
ACCGGTAAAA ACGTGACGCA GTTGCAAAAA ATGAGCGCAG CAGGCGAGTT GGGCCGCGAC
GTCATGAAGC AACTGTTTGA CGAAATGGGC AAGCAAGCCA ACGGCCAAGC ATCAAAAAGC
TTAGACCTGT TGGGTGGTCA GATTAATTTA ATCTCAAACA AGTGGACCGA GTTTAAGCAA
ATTATTGCCG ATTCTGGTGC GTACCAGGTG GCGGTTGATT TACTTAAAGA CATTAACGCA
AGGTTTGATG AATTAAATAA AGGCGGGAAG ATAAAGGAAG CCGCACAGGA TATCAGTGAT
TTTTTCACCA CCATACTTAA AGATGGTGGC GATAGCATTA AGACTACACT CGAAAATATT
ACCGCATTCA CAACAGGTTT AAATGTTGTT TCTGGTAGTT TGCGCGCGTT GTTCAATGGT
TTGTCGCTCA TGGTATCCGC TTTTGGTGCT GCAGTTGCTG GTGCGTTTGC CATGTTCCCA
CTAGGTATGG CAAAAGCGCT GAGTGTTTTT GGTGATAATG CTCTATCAAA TAAATTCCAA
GAAGCCGCTG ATGGATTGTT ATCTATATCT AAGGCGTATG TTGAGCAAGT TAAACAAGAT
GCTAAAGATG TTGCGACCGC GCTTAAACAA GCCGGTGTAG ATATTCAAAG TGATTCTGAT
GACACGACAA AAACACAGGT TGAGAATGCT GAAAAAGTTA AAGCAGCCAT GCAATCACAA
GCTGAGGCAC GCTATAGCGC TTATCAAAAG GATGTTGCAA CCAGTGAGAA GTTATCAGGC
TTAGCTCAAA AAGAAGTTGA TGATTGGAAG GCTCGACAAA AGGCTGCAGA AGACCATTAC
ACCAAACTGA AAAGTAGCGG TACCGCTACG TTAGAGGAAA TTGAAGCCGC CGAAACAAGG
TATGGTAGTG CCACCTTAAA AGTAACTGAT TTGTTGGTTG CTCAATCTTC TGCCCAGCGT
GATTTAACCG ATTCGCAATT AAAGCTAAAT GCGGCGACTG TGGTTTTTCT ATCTGCTCAA
AGCGAACTTG CCGACAGAGA ACTAAGCAAG GTTCGCGATG CTTACATCGA GGGCACTACA
TCAGTTGAGG ACTATGAAAA AGCCCAAGCT AAAGCGAAAA CTGCGGCAGA GGCATTAGCC
AAAGCGCAAG GTGAATTGGT TAACTCAACA GACGCGCAGA CAAGGGCTGT TAATGATTAT
GAAGCGGCGA TGGAGCAAGC CAATGTCACT ACATTAAAGT CGCTGCAAGA TTTAGCGGCC
AAAGCAAAAA AAGCCTACGA CCAGACTAGT GAAGCCATTA AAAATGGCGT CGGCTCAACT
TATGACGCTG AGCAAGCCTT TTTAAAATAT GCGGACGCAT CGATAAAAGC CGCGGCGGCT
GGTGATAAGC AGGTCGAGGC CAGTATTCGT CAACAAGCTG CTAATCTTGG CTTGAGCGAT
AATATTGAGG ATTTAATAAA GCAGTATTAT CGGCTAAAAG ACTCGCAAAA GGATTTGGTT
GATGATGTTA ATAATACTGA AGATCAAGTA AACAATGCGA ACCAAGGCAT TGGCACTACC
ATGGAAAACA CCATGGGGGT GGTGGTTAAA AGTGCGCAGC AAGCCGGTTC TGCATTAGCC
AGTGTTGCCA AGTTCTTCAC CGATTATTTA AAAAGTGTTA CAGCCGAAGT CGCTGAACTC
AGCACGGGGG CTGTGGCTTA CTTTAAGTCG ATACTGTATG GCCAAACGCT ATTAACTGAC
TCAAGCAGTG AACTAGAGAA AACCATTAAG ATTTACAAAA ATCTAAGTGG TGAGATTAGT
GATCTGCTTG ATGTGCAAGC CAAATCAATC GATTTTACTG GCATTAGTAA TTTTGCCCGT
AAAGCCGAGA TAGCCGGTAA GCAAGCGCAG GCGGCCTATT ATGGCCAACG CATTGAACTG
TTAAAAATGG TTGATGCCCT TGATGCTGCC GAAAGTGGCA ACATTGGCTT AATCAATAGT
GCCGAACGTG CGGCTAACTC AATGAACTTG ATGAACGATC AAGACTTGGG AGTGCTGCGC
ACGGCCATTG ATTCGGCTAA ATCGAGCATG GACTCTCTAC GTGATAGTGC TCAATCAACC
CTCGATACGT TGCAAGACGA ACTAGACGGT TACCTTGGCC GCCAGGATGA AATCGAAAAG
CGCCGTTATC AGCAAGAGCT AGCCGATATT AAAACCCAGT TAGCTCAAGC TGAATCAACG
GGCGACAAGA CACTCATCAC CCAACTGAGA GAAGCCGAAA AAACGCTAAA CAAGGTTTAC
GCTTATCGCA CCGCCGAAAT CAAAGCCCAG CAAGACGCTA GCGAAAAGCA AGCCATTAGC
GACGCAGCTA CCACCAAACA GCAATCTACC GCCAGTGCTG TGCAAACCAA TGTGACTACC
CAAACCCAGC CAACCATTAC AACGGCCGCC GCGAATAGTA GCGACACCGT AGTGCTGCAG
CTGCAAGTGG GTAACCGCAC GTTTGATGCA CAAACCAAGC GCAGTATTGT GAATGAACTT
GTGGCCGAAA TTAAGCGTTT GCAGTCGGTG GGTGGTTAG
|
|---|
| Protein sequence | MSFKDQVINL IIQGKDLFSS EAKKSEKAVA ELASQSEILN ARLKELEDLQ AAANSIDGLT
ASISKGERAY KDNSVALDKL VTEQKAAVKE LKQLEAAQKA AEGSTNQLEQ EYNQAQAALV
KYETELQQAR VEVAKLSTEQ QQGATASKEQ ATALTKASTD LQKLTNEQTS AKNAATELAT
ALDNQRRDLL EVSTATEAAS RNKADYTLKV KTARTEVNQL ASSINKNKTE LDKNTASLKN
AGISTDKLAD ASKELKQQQV AAETALSGVN NKLERHNKLL TESKKQAGDF GGSIKSATVS
LVAMAGAYIG VDKLWESLKS ILTAGDEAKA FGVQMSAMMG SIASGEQATK WIKDFANNTG
TRLDTAKQAF ASLKTFGIDP MNGSLQSMVD YNARLGGSQE KLEGIILAVG QAWAKQKLQG
EEILQLVERG VPVWDLLEKV TGKNVTQLQK MSAAGELGRD VMKQLFDEMG KQANGQASKS
LDLLGGQINL ISNKWTEFKQ IIADSGAYQV AVDLLKDINA RFDELNKGGK IKEAAQDISD
FFTTILKDGG DSIKTTLENI TAFTTGLNVV SGSLRALFNG LSLMVSAFGA AVAGAFAMFP
LGMAKALSVF GDNALSNKFQ EAADGLLSIS KAYVEQVKQD AKDVATALKQ AGVDIQSDSD
DTTKTQVENA EKVKAAMQSQ AEARYSAYQK DVATSEKLSG LAQKEVDDWK ARQKAAEDHY
TKLKSSGTAT LEEIEAAETR YGSATLKVTD LLVAQSSAQR DLTDSQLKLN AATVVFLSAQ
SELADRELSK VRDAYIEGTT SVEDYEKAQA KAKTAAEALA KAQGELVNST DAQTRAVNDY
EAAMEQANVT TLKSLQDLAA KAKKAYDQTS EAIKNGVGST YDAEQAFLKY ADASIKAAAA
GDKQVEASIR QQAANLGLSD NIEDLIKQYY RLKDSQKDLV DDVNNTEDQV NNANQGIGTT
MENTMGVVVK SAQQAGSALA SVAKFFTDYL KSVTAEVAEL STGAVAYFKS ILYGQTLLTD
SSSELEKTIK IYKNLSGEIS DLLDVQAKSI DFTGISNFAR KAEIAGKQAQ AAYYGQRIEL
LKMVDALDAA ESGNIGLINS AERAANSMNL MNDQDLGVLR TAIDSAKSSM DSLRDSAQST
LDTLQDELDG YLGRQDEIEK RRYQQELADI KTQLAQAEST GDKTLITQLR EAEKTLNKVY
AYRTAEIKAQ QDASEKQAIS DAATTKQQST ASAVQTNVTT QTQPTITTAA ANSSDTVVLQ
LQVGNRTFDA QTKRSIVNEL VAEIKRLQSV GG
|
|---|
| |