Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1678 |
Symbol | |
ID | 4277704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1982575 |
End bp | 1984545 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638134463 |
Product | peptidase S14, ClpP |
Protein accession | YP_750367 |
Protein GI | 114562854 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGGTG CTGCCAATGG CGTGGTCGAA TTGATTTTAT ATGGCGATGT TGGCTGGGAT TTTACCGCCA AACAAATCGC CACTGACCTA CGTGCAATGG GCAAAGTATC GCAAATTAAC GCTTACATTC AATCGGGTGG CGGCGATGTG ATGGACGGCA TGGCCATTTA TAACATTCTC GCGCGTTGGC CTTGCCAAAA GTCGATTTGT ATTGAGTCGG TTGCAGCTTC TATGGCCAGT GTTATTTGCA TGGCATTCGA TACCGTGATT ATGCCGTCCA ATGCCTTTTT GATGATCCAT AGCAATTGGG GCGGTGCCGT TGGTACTGCT GATGATTTAC GTGAATACGC GGACTTGCTC GATAAGTGGC GCTCAAGTAT GGGCAAGGCT TATCAAGATA AAGCCGGCGG CAAGTTAAGT GATGAACAGC TAGGACAATT TTTTAAAGAA GACACTTGGT TGTCTGCGCA AGAAGCGGTT GATCTTGGGC TAGCAGATGA AGTGATAGAA CCGATGCAAA TGGCTGCATC AATTAATTTT AAACGACTGA AGGACTTTAA TAATATGCCT AAAGCATTAC AAACCCTGCT AGCACAACAG GGCAATATCG GTGCTACCAC CCCCAATTCG CCTGCGCCAG CAGCCATTAA TACACCAGCC CCAGTAGCTT CGGTACCAGC ACCAGTTGCA CCGTCGCAAG CTGATATTCA AGCTGCTGCC ATTACCTTTA ATGCAGAACG TATTACCGGT ATTAATGCCG CGTTTGCTAC GTTCCCGCAA TTAGCTGAAC TTAAAAACAG TTGTATTGCT GATGCCAACA TCAACGCAGA CAAAGCCAAA GACATGATTT TGGCTAAGCT TGGCGAAGGT GTCACGCCAT GCGCCGTACA GCCTAAAAGT GTCATTATTC ATGCCAGCAA CGGTAACATT GTTGGTGACT CAATTCGTGC GCAATTAATG GCTCGAGCAG GCCATGAAGC GGCACAAAAA GACAATGGCT ATGGTAGCTA TAACTTACGT GAACTTGCTC GTGCATCATT AGCCGACCGC GGTATTGGTT GTGCCGGTAT GAACGTGATG CAAATGGTGG GGTTAGCGTT TACTCATACC TCATCTGATT TCGGTAACAT CATGTTAGAT GTGGCCAATA AGTCAGTATT AAAAGGTTGG GCTGAAGCGG CTGAAACCTT TGAACGTATC GCTAAAAAAG GTCAGTTAAG TGACTTTAAA GTCGCGCATC GTGTTGGCAT GGGTGAGTTT AAAAGCTTAC CAGAAGTGAA GGACGGAGCA GAGTACAAGT ACATCACTGT TGGTGACCAC GCTGAAAAAA TTGCCCTAGC AACTTACGGC GGCATTTTCA CGTTAACACG CCAAACGGTT ATCAACGATG ACATGGACAT GTTAATGGGC GTACCGATGA AAATGGGTAA AGCCGCTAAG CGCACTATTG GTGATTTGTT CTGGGCCGTG TTAACCAAAA ACGCCAAAAT GAACGACGGC AAAGCTTTGT TCCATGCCGA TCACGGCAAC TTAACATCGG GCGCACCAAG CGTTGAAGCG TTCAGCATTG CGGCTGAGTT AATGGAATCG CAAATGATTG GCGAATCTCC ATTAAACATC ATGCCAGCAT TTGCATTGGT ACCACCTAAC CTTAAGCGTG CAGTGCTGCA AATCATTCAA TCAACGTCGG TTAAAGGCAC CGATGCAAAC TCAGGTATTG CTAACCCAAT CCGCGACTTT GTTGAAGTAT TGTCAGAGCC TCGCTTAAAA GCGAAAAGCG ATAAAGAGTG GTATTTGTCA GCCGCTCAAG GTGAAGACAC CATTGAAGTG GCTTACCTTG ATGGTATCGA CACGCCATAC ATTGAGCAGC AACAAGGTTT CACCGTTGAT GGTGTAGCAA CCAAAGTGCG TATTGATGCC GGTGTATCAC CACTTGATCA CCGTGGCTTG GTTAAATCAA CGGGTGTGTA A
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Protein sequence | MKGAANGVVE LILYGDVGWD FTAKQIATDL RAMGKVSQIN AYIQSGGGDV MDGMAIYNIL ARWPCQKSIC IESVAASMAS VICMAFDTVI MPSNAFLMIH SNWGGAVGTA DDLREYADLL DKWRSSMGKA YQDKAGGKLS DEQLGQFFKE DTWLSAQEAV DLGLADEVIE PMQMAASINF KRLKDFNNMP KALQTLLAQQ GNIGATTPNS PAPAAINTPA PVASVPAPVA PSQADIQAAA ITFNAERITG INAAFATFPQ LAELKNSCIA DANINADKAK DMILAKLGEG VTPCAVQPKS VIIHASNGNI VGDSIRAQLM ARAGHEAAQK DNGYGSYNLR ELARASLADR GIGCAGMNVM QMVGLAFTHT SSDFGNIMLD VANKSVLKGW AEAAETFERI AKKGQLSDFK VAHRVGMGEF KSLPEVKDGA EYKYITVGDH AEKIALATYG GIFTLTRQTV INDDMDMLMG VPMKMGKAAK RTIGDLFWAV LTKNAKMNDG KALFHADHGN LTSGAPSVEA FSIAAELMES QMIGESPLNI MPAFALVPPN LKRAVLQIIQ STSVKGTDAN SGIANPIRDF VEVLSEPRLK AKSDKEWYLS AAQGEDTIEV AYLDGIDTPY IEQQQGFTVD GVATKVRIDA GVSPLDHRGL VKSTGV
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