Gene Sfri_1648 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1648 
Symbol 
ID4277307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp1957596 
End bp1958288 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content43% 
IMG OID638134433 
Productputative phage repressor 
Protein accessionYP_750337 
Protein GI114562824 
COG category[K] Transcription 
COG ID[COG2932] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00656681 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACAC TTGCCCAAAA CATCCAAGAA AAGCTAAAAG CTTCTGGTTT AACCCAAAAG 
GAATTAGCAG AACGCGCCAA CATCTCACAG GTGATGGTGC ACAAACTCAT TTCTGGAAAA 
GCTAAAGAGT CATCAAAGTT AGTTGCTATA GCAGGTGTAT TAGGTTGCAC TGCAGAAGAG 
TTAATGTATG GATTAGAAAA GCATGTTCCA ACGAGCAATG CCGAATGGGC AGGCCCAATG 
GAAACATGGG ATAGCAACAC CCCACTAAAT GACGATGAAG TAGAGATACC ATTTTATATG 
GAAGTAGAAT TAGCCGCAGG ACACGGTATA GCAGAGGCTA GCGAATATCA CGGCCCAAAA 
CTACGCTTTG CAAAATCTAC ATTACGTAAA TCAAGTGTTG ACCCAACCAA TGCAGCTTGC 
GTGCGTGTTA GCGGCAATAG CATGGAACCG GTATTACCCA GCGGCTCAAC CGTTGGAGTA 
GACACATCAC AAACAGATGT AATCGACGGT AAAATGTACG CTATAAATCA CGATGGTATG 
TTGCGGGTAA AAACTTTATA CAAGTTACCA GGTGGCGGTT TGCGCCTTCG CAGCTACAAC 
ATCGACGAGT GGCCAGATGA ACGCTACGAA GGTGAAGCCA TCAAACAAAT CAAAATTATT 
GGCAAAGTGT TTTGGTATTC GGTTTTAATG TAA
 
Protein sequence
MKTLAQNIQE KLKASGLTQK ELAERANISQ VMVHKLISGK AKESSKLVAI AGVLGCTAEE 
LMYGLEKHVP TSNAEWAGPM ETWDSNTPLN DDEVEIPFYM EVELAAGHGI AEASEYHGPK 
LRFAKSTLRK SSVDPTNAAC VRVSGNSMEP VLPSGSTVGV DTSQTDVIDG KMYAINHDGM 
LRVKTLYKLP GGGLRLRSYN IDEWPDERYE GEAIKQIKII GKVFWYSVLM