Gene Sfri_1639 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1639 
Symbol 
ID4277298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1952270 
End bp1953481 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content41% 
IMG OID638134424 
Productphage integrase family protein 
Protein accessionYP_750328 
Protein GI114562815 
COG category[L] Replication, recombination and repair 
COG ID[COG0582] Integrase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0427266 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTTTAT CTGACACGCA GTTACGTTCT ATAAACGGAA AACCATATAC TGGTAAGCCT 
GAGATTGCTG ACCGTGACGG TTTAAGTGTC CGCATTAGTA ATGCCGGCAC TATAACTTGG
CAGTACCGCT TCCGTTTTCG TTCTTCTGTT GGACGTTTAA CTTTAGGTCG CTATCCTGAT
GTTAAATTAT CTGAAGCTCG AAAATTCGTA CCTGAACTGA GAAACGCATT AGCGAATGAT
ACAGATCCAA GAGTGTATTG GAAACAACGC AATACAAGAA GAGGCAAAGT GAATGTCAGA
TATTGCTGCG AACAGTTTTT ACTTAAACAA GGTAGTTCGT TAAAGCCTGG AACGATTGCT
ACCTATCAAT CATGTTTTCG TGTGCATTTG TTTGATGCTT TTGATGATAG GTTAGTTGAT
GATATTACAC TTGGAGAATG GATTGACTTC TTTGATGAGA AATCAAAAGT GAGTCGAGTA
ACCTCTGGTG CCATACTAAA ACAGTTAAAG ACAATACTAA ATTGGTCAGT AAGAAGACAA
TTAATCAAAT CGGTTGATGT GTTACAGCTT AGAGTATCAG ACATTGGCTC AGCCTCCACA
GTTGGTTCAC GAGTGTTAAC CGTACTCGAA TGCGGGAGAA TTTGGCGTGA GCTAGACAAA
ACAAGAGCAA CAAGAACCAT CACCAATTCT ATAAAGGCTT GCATGATGAC AGGTGCGAGG
GTGTCTGAGC TACTTAAATC AAGTCGTGCT GATTTTGATT TAGACAGTAT GGTGTGGACT
GTTCCGGTTA TTAACAGTAA AACTAACCAA CCTATCAGGC GGCCAATAAG CCCAGCTTTA
CTCGAGCTGC TTCAGGAGCA ATGGTCTTTA CATCGCTCTC AATGGACTTT TCCTGCACCA
AATGACTTTA AAAGACCTGT TGGTATAGCG TCGGTTAATA AATTAGTCAG AGAAATCAGA
CCAAGAGTAG ATATTCCAGA CTGGAGACTG CATGATTTCA GAAGAACTAT TTCAACGAGA
CTTTCTGAGC TTGGTGTTTT GCCGCATGTA ACAGAAAAAA TGCTAGGTCA TGTCCTTGGT
GGTGTGATGG CTGTTTATAA CAAGCATGAT TGGCTAGATG AGCAAGCAGC AGCATACCAA
ATGTGGACGG AAAAACTGCT GCTGTCTGCT AAAGGGGATA GAAATGCAAT GTTGTTGGAT
ACCTTGCCTT AA
 
Protein sequence
MSLSDTQLRS INGKPYTGKP EIADRDGLSV RISNAGTITW QYRFRFRSSV GRLTLGRYPD 
VKLSEARKFV PELRNALAND TDPRVYWKQR NTRRGKVNVR YCCEQFLLKQ GSSLKPGTIA
TYQSCFRVHL FDAFDDRLVD DITLGEWIDF FDEKSKVSRV TSGAILKQLK TILNWSVRRQ
LIKSVDVLQL RVSDIGSAST VGSRVLTVLE CGRIWRELDK TRATRTITNS IKACMMTGAR
VSELLKSSRA DFDLDSMVWT VPVINSKTNQ PIRRPISPAL LELLQEQWSL HRSQWTFPAP
NDFKRPVGIA SVNKLVREIR PRVDIPDWRL HDFRRTISTR LSELGVLPHV TEKMLGHVLG
GVMAVYNKHD WLDEQAAAYQ MWTEKLLLSA KGDRNAMLLD TLP