Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1639 |
Symbol | |
ID | 4277298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1952270 |
End bp | 1953481 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638134424 |
Product | phage integrase family protein |
Protein accession | YP_750328 |
Protein GI | 114562815 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0582] Integrase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0427266 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTTTAT CTGACACGCA GTTACGTTCT ATAAACGGAA AACCATATAC TGGTAAGCCT GAGATTGCTG ACCGTGACGG TTTAAGTGTC CGCATTAGTA ATGCCGGCAC TATAACTTGG CAGTACCGCT TCCGTTTTCG TTCTTCTGTT GGACGTTTAA CTTTAGGTCG CTATCCTGAT GTTAAATTAT CTGAAGCTCG AAAATTCGTA CCTGAACTGA GAAACGCATT AGCGAATGAT ACAGATCCAA GAGTGTATTG GAAACAACGC AATACAAGAA GAGGCAAAGT GAATGTCAGA TATTGCTGCG AACAGTTTTT ACTTAAACAA GGTAGTTCGT TAAAGCCTGG AACGATTGCT ACCTATCAAT CATGTTTTCG TGTGCATTTG TTTGATGCTT TTGATGATAG GTTAGTTGAT GATATTACAC TTGGAGAATG GATTGACTTC TTTGATGAGA AATCAAAAGT GAGTCGAGTA ACCTCTGGTG CCATACTAAA ACAGTTAAAG ACAATACTAA ATTGGTCAGT AAGAAGACAA TTAATCAAAT CGGTTGATGT GTTACAGCTT AGAGTATCAG ACATTGGCTC AGCCTCCACA GTTGGTTCAC GAGTGTTAAC CGTACTCGAA TGCGGGAGAA TTTGGCGTGA GCTAGACAAA ACAAGAGCAA CAAGAACCAT CACCAATTCT ATAAAGGCTT GCATGATGAC AGGTGCGAGG GTGTCTGAGC TACTTAAATC AAGTCGTGCT GATTTTGATT TAGACAGTAT GGTGTGGACT GTTCCGGTTA TTAACAGTAA AACTAACCAA CCTATCAGGC GGCCAATAAG CCCAGCTTTA CTCGAGCTGC TTCAGGAGCA ATGGTCTTTA CATCGCTCTC AATGGACTTT TCCTGCACCA AATGACTTTA AAAGACCTGT TGGTATAGCG TCGGTTAATA AATTAGTCAG AGAAATCAGA CCAAGAGTAG ATATTCCAGA CTGGAGACTG CATGATTTCA GAAGAACTAT TTCAACGAGA CTTTCTGAGC TTGGTGTTTT GCCGCATGTA ACAGAAAAAA TGCTAGGTCA TGTCCTTGGT GGTGTGATGG CTGTTTATAA CAAGCATGAT TGGCTAGATG AGCAAGCAGC AGCATACCAA ATGTGGACGG AAAAACTGCT GCTGTCTGCT AAAGGGGATA GAAATGCAAT GTTGTTGGAT ACCTTGCCTT AA
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Protein sequence | MSLSDTQLRS INGKPYTGKP EIADRDGLSV RISNAGTITW QYRFRFRSSV GRLTLGRYPD VKLSEARKFV PELRNALAND TDPRVYWKQR NTRRGKVNVR YCCEQFLLKQ GSSLKPGTIA TYQSCFRVHL FDAFDDRLVD DITLGEWIDF FDEKSKVSRV TSGAILKQLK TILNWSVRRQ LIKSVDVLQL RVSDIGSAST VGSRVLTVLE CGRIWRELDK TRATRTITNS IKACMMTGAR VSELLKSSRA DFDLDSMVWT VPVINSKTNQ PIRRPISPAL LELLQEQWSL HRSQWTFPAP NDFKRPVGIA SVNKLVREIR PRVDIPDWRL HDFRRTISTR LSELGVLPHV TEKMLGHVLG GVMAVYNKHD WLDEQAAAYQ MWTEKLLLSA KGDRNAMLLD TLP
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