| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1621 |
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| Symbol | |
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| ID | 4277280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1929025 |
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| End bp | 1930215 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134406 |
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| Product | cystathionine beta-lyase |
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| Protein accession | YP_750310 |
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| Protein GI | 114562797 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.753909 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCAAAG ACGATAAACT GGCCACCCAA ATTGTTAGCG TTGGCCGCGA AAAAAAGTTC
ACTAAAGGCA TTATTAATCC ACCTGTATTT AGAGCATCTA CCGTGGTGTT CGACACCATG
GATGAGATGC GTTTTGCGAT TAAAAACAAA ACCAACGGTG AAATGTTTTA CGGTCGTCGC
GGCACCCCAA CCCATTTTTC ATTTCAACAA GCCATATGTG AACTTGAAGG TGGTGCTGGC
ACTGCGTTAT ACTCTTCTGG TGCGGGCGCG ATCAGTAGCG CTTTGTTGTC ATTTTTAAAA
AGTGGCGACC ATTTATTAAT GGTCGACACC GCCTATGAAC CAACGCGCGA TTTATGCAAT
AAAATGCTGG CAGGTTTTGG TATCGAAACC ACCTATTACG ACCCAATGAT TGGCGCAGGC
ATTCGTGAGT TAATTCGTCC TAACACCAAG GTATTATTTT TAGAATCACC AGGTTCTATC
ACCATGGAAG TTCAAGATGT ACCAACGCTT AGCCGTATCG CTCACGAACA TGATGTCATT
GTAATGCTGG ATAATACCTG GGCATCACCG ATTAATTCTC GTCCATTTGA TATGGGGGTC
GACATCTCTA TTCAAGCCGC CACCAAGTAC ATTGTCGGCC ATTCAGATGT CATGATGGGT
ACCGCCACTG CCAATGAACA GCATTGGGAA CAACTGCGCG AAAACAGTTA CTTAATGGGC
CAAACTACCT CGCCGGATGA CGTCTATTTA GCTGCGAGAG GCTTACGTAC CCTAGGGGTA
CGTATGGCAC AACATAATAA AAATGCCTTA AAAGTGGCGA ATTGGTTGGT GACTCGTGCA
GAAGTGGATC ATGTCCGTCA TCCAGCATTT GATACTTGCC CAGGTCACGA GTTTTTTAAA
CGCGATTTTA GCAGCGGTAA CGGTTTGTTC TCATTTGTAC TTAAGCAAGG CGACTTAGCG
TCAGTCACAG CTTTTGTTGA AAACATGGAC CATTTTAAAA TGGGTTTTTC ATGGGGCGGT
TTCGAAAGCT TAATCTTAGG GGTATTCGGT ATTAACAATA TCCGTACTGC TACCCAATGG
GACAGCAGTA AACCATTAAT ACGCTTACAC ATTGGACTTG AAGATGCCGA CGATTTAATT
GCCGATCTCG ATGCTGCCTT TAGTCGATAT AATGCAATAT TACAGAAATA G
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| Protein sequence | MSKDDKLATQ IVSVGREKKF TKGIINPPVF RASTVVFDTM DEMRFAIKNK TNGEMFYGRR
GTPTHFSFQQ AICELEGGAG TALYSSGAGA ISSALLSFLK SGDHLLMVDT AYEPTRDLCN
KMLAGFGIET TYYDPMIGAG IRELIRPNTK VLFLESPGSI TMEVQDVPTL SRIAHEHDVI
VMLDNTWASP INSRPFDMGV DISIQAATKY IVGHSDVMMG TATANEQHWE QLRENSYLMG
QTTSPDDVYL AARGLRTLGV RMAQHNKNAL KVANWLVTRA EVDHVRHPAF DTCPGHEFFK
RDFSSGNGLF SFVLKQGDLA SVTAFVENMD HFKMGFSWGG FESLILGVFG INNIRTATQW
DSSKPLIRLH IGLEDADDLI ADLDAAFSRY NAILQK
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