| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1591 |
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| Symbol | |
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| ID | 4277983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1894999 |
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| End bp | 1896564 |
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| Gene Length | 1566 bp |
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| Protein Length | 521 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134376 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_750280 |
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| Protein GI | 114562767 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCCG CTAAATTTGT TGAGGGTTCT ATTTTACGCC ATATTTTGGT GATGAGCTCT
ACTGCTGCAG TGGGTATTTC GGCGCTGTTT GTGGTCGACT TACTCGATAT TTTCTTTTTA
AGTCTGCTTG GTGAAATAGA GCTTGCCGCT GCAGCTGGTT ATGCCAGTAC AATTTCATTT
TTTACCACAT CAATAGGTAT TGGTTTATCC ATTGCTCTTG GGGCTTTGGT GTCAAAAGCC
GTGGGTTCTA AGAACATAAA GTTAGCTAAG AGATTGTTTT TAAACAGTGC CATAGTGACC
TTAATTACCA GTGTGCTGGT GGCCGCAGTT GTCATCGCGT TTATTCCAGA ATTGTTAGCG
TTAGTGGGGG CAACTGGGCG CACTGCGGAA TTGGCTGAAA GCTACTTGTA TATTCTGGTG
CCATCTTTAC CGTTTATTTG TTTAGCAATG GCGCTTGGCG GCGCACTGCG CGCTGTGGGT
GATGCCAAAC TATCGATGAT GTCGACGCTA GCCGGTGGTG GTGTCAATGC CATACTCGAT
CCTATCTTCA TTTTCTCCTT ATCAATGGGC ATTGAAGGGG CGGCGGCCGC ATCAGTACTT
GCTCGTATAG CCGTGTTCAT TATTTCTGCC CGCGGTGTGG TAGTAAAACA TAAATTATTA
GGTCGCTTTT CGTTTGATGA GTTTAAGCAA GATTTAGGGG TTATTTTTTC AATTGCCGCG
CCTGCAATGT TAACCAATGT GGCAACCCCA ATTGGTAATG CGGTGGTAAC CCGTGCCATA
GCAGATTTTG GTGATAGTTA TGTGGCTGGC TGGGCGGTAT TAGGGCGTTT AATCCCAGTA
TCGTTCGGGA TGATTTTTGC ACTATCTGGC GCTGTTGGGC CGATTGTGGG TCAAAACTTT
GGAGCCAATG AAATTGAGCG TGTCCGATTG AGTTTAACCA AAGCGATTCA ATTTTGTGTC
GCTTATGTGT TGATGATGTC TCTTGGGCTG TATCTGTTAC GAAATGTCAT TATTAGTAGT
TTTGATATGA AAGGCGATGC GGCAGAACTT ATTTTGTTTT TCTGTCAGTA CATCGCGGTG
TTCTTTATCT TTTCGGGCAT TTTGTTTATT GCTAACGCCT CATTTAATAA TTTAGGTAAA
GCCAAATACT CGACCTTTTT TAATGTGGGT AAAGCAACCA TAGGCACCAT ACCATTTGTG
TATTTTGGCG CGCAGTGGGG CGGTGTATTT GGAGTATTAA TTGGTCAGGT GATTGGGGCA
ATTATATTTG GTGTGATAGG TATTTTATGT GCATATCGAT TAGTCGATAA AATTAGCCGC
CAAGGCATGC TAACGGCGGG TGCCAACCAA CAACTGCTAG AAGACGATGC CATCAACATT
GATATGGTGG CTGCTCCTTC ACCTATGCCT GGGCGCACTC AGATGGCCCA ATTAGATGAA
GAGCCGCTGT GTAAACAATT AGCTCAACAA GATAACGCCG ATACAGACGA TATTGAAAAA
GTGGGTGCTA ATAACACGAG TACCGATAAA ACCGCTAGTG ACAAAAGCAC CGAAAAAACC
AATTGA
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| Protein sequence | MTAAKFVEGS ILRHILVMSS TAAVGISALF VVDLLDIFFL SLLGEIELAA AAGYASTISF
FTTSIGIGLS IALGALVSKA VGSKNIKLAK RLFLNSAIVT LITSVLVAAV VIAFIPELLA
LVGATGRTAE LAESYLYILV PSLPFICLAM ALGGALRAVG DAKLSMMSTL AGGGVNAILD
PIFIFSLSMG IEGAAAASVL ARIAVFIISA RGVVVKHKLL GRFSFDEFKQ DLGVIFSIAA
PAMLTNVATP IGNAVVTRAI ADFGDSYVAG WAVLGRLIPV SFGMIFALSG AVGPIVGQNF
GANEIERVRL SLTKAIQFCV AYVLMMSLGL YLLRNVIISS FDMKGDAAEL ILFFCQYIAV
FFIFSGILFI ANASFNNLGK AKYSTFFNVG KATIGTIPFV YFGAQWGGVF GVLIGQVIGA
IIFGVIGILC AYRLVDKISR QGMLTAGANQ QLLEDDAINI DMVAAPSPMP GRTQMAQLDE
EPLCKQLAQQ DNADTDDIEK VGANNTSTDK TASDKSTEKT N
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