| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1575 |
|---|
| Symbol | |
|---|
| ID | 4277967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1878179 |
|---|
| End bp | 1879087 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638134360 |
|---|
| Product | peptidase M23B |
|---|
| Protein accession | YP_750264 |
|---|
| Protein GI | 114562751 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.745708 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTTTG TCGCTATTAA CAAGGAATGC GTTTCGATTA TGTTATTAAA AAATACCGTT
TTAAAATCGA TATCAACAGT TGCAATGCTG GTGGTCAGCT TTTGTGGCTT AAGTGCTAGT
GCGATTGCCG CTGTGACATT TCAAGGCCAG TTTGAACAAG GTGCATTAGT GCGTGGCGCA
GTGCCGGTCG GCAGTAAAGT ATTACTTAAT GGCCAATCGG TAAAGGTCAC CCCAAATGGT
CAGTTTGCCA TTGGATTTGA TAGAGACGCT AAGCCAGAAC AAGTGTTTAA AGTCATTTAT
CCAGACGGAT TAACAGAAAT TAAGCCGTTA ACAATAGCCG CAAGACAATA CAAAATTGAT
CGGGTCACAG GCATCAGCCA AAAAATAATG AAACCGGATC CCGTCGCCCA AGCCAGAGCG
GCTAAAGACG CCAAACAGAC TCGCGCTGCC AGAGACTTAT TTAGTCAACA ACAGGCATTT
ATGCAAACAT TTATTTGGCC GGTTACTGGC AGAATTTCAG GGGTTTATGG CAGCCAGCGG
GTTTACAACG ACGTACCTGG TAATCCGCAT TTTGGTGTTG ACGTTGCGCG TCCAACAGGC
ACGCTAGTGG TTGCGCCAGC AGATGGTGTT ATTACATTAG CTGAGCCAGA TATGTTTTAT
TCTGGTGGTA CAGTGATTAT CGACCACGGT TATGGTGTTA GCTCTACCTT CTTACACCTG
AGTAAACTGT ATTTAAAGGT TGGTGATAAA GTTGTGCAGG GTGATAAGGT CGCTGCCATT
GGTGCCACTG GTCGAGTGAC TGGCCCGCAT TTAGATTGGC GCCTAAACTG GTTCCAAATG
CGTTTAGATC CCGTCTCGAT TGTACCGCCA ATGGCGACAA TACTGGCTGC AGAGAAAGCG
GCAAAATAG
|
|---|
| Protein sequence | MFFVAINKEC VSIMLLKNTV LKSISTVAML VVSFCGLSAS AIAAVTFQGQ FEQGALVRGA
VPVGSKVLLN GQSVKVTPNG QFAIGFDRDA KPEQVFKVIY PDGLTEIKPL TIAARQYKID
RVTGISQKIM KPDPVAQARA AKDAKQTRAA RDLFSQQQAF MQTFIWPVTG RISGVYGSQR
VYNDVPGNPH FGVDVARPTG TLVVAPADGV ITLAEPDMFY SGGTVIIDHG YGVSSTFLHL
SKLYLKVGDK VVQGDKVAAI GATGRVTGPH LDWRLNWFQM RLDPVSIVPP MATILAAEKA
AK
|
|---|
| |