Gene Sfri_1573 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1573 
Symbol 
ID4277965 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1875811 
End bp1876515 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content42% 
IMG OID638134358 
Producttwo component transcriptional regulator, winged helix family protein 
Protein accessionYP_750262 
Protein GI114562749 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGGAC ATGTTCATCA ACAACCATTG ACCATATTAG TGGTGGAAGA CGAGCCTAAA 
ATAGCGCAGA TCTTAGTCGA CTTTTTAACC CTAGAAGGTT TTAACACCTT GGTACAACAC
GACGGTCGTG ATGTGATTGA AACCATTAAG GCTCAACAAA TTGATTTTAT GATTCTAGAT
TTGATGTTGC CCTATAAAGA CGGATTGACG ATTTGTCGTG AGTTGAGGCA ATTTTCAATG
TTGCCAGTAT TAATGTTAAC GGCGCGGGTA GATGAAATTG ACCGTTTAAT GGGCTTAGAT
ATCGGCGCAG ACGATTATGT GTGTAAGCCA TTTTCGGCTA GGGAAGTTGT TGCTCGGGTA
AAAACGATTT TAAGGCGAGT CGAAAATACT CACGGCAGTC AAAGCGAGCA GGTTATTCGT
TATAAGCATC TACAAATCAA TATCGAACGC TTTAAATGTC AGGTTGACCA ACAAGACGTA
GAATTAACCC CAGTTGAATT TAGACTACTG CATACGCTGC TAAAACGGCC AGGCGTAGTG
CACTCTCGAG ATAGCCTCAT GCAGGTGTGT TATGTCGACG ATCGTATTGT TAGTTCGCGT
ACCATTGACA GTCATGTGAA GAATCTACGT CATAAGTTAA CCCAAGCCAG CCAACAAAAG
GAGTTGCTGC ACTCCATTTA CGGTGTGGGT TATAAGGTAG AGTAA
 
Protein sequence
MSGHVHQQPL TILVVEDEPK IAQILVDFLT LEGFNTLVQH DGRDVIETIK AQQIDFMILD 
LMLPYKDGLT ICRELRQFSM LPVLMLTARV DEIDRLMGLD IGADDYVCKP FSAREVVARV
KTILRRVENT HGSQSEQVIR YKHLQINIER FKCQVDQQDV ELTPVEFRLL HTLLKRPGVV
HSRDSLMQVC YVDDRIVSSR TIDSHVKNLR HKLTQASQQK ELLHSIYGVG YKVE