Gene Sfri_1572 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1572 
Symbol 
ID4277964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1874303 
End bp1875808 
Gene Length1506 bp 
Protein Length501 aa 
Translation table11 
GC content43% 
IMG OID638134357 
Productperiplasmic sensor signal transduction histidine kinase 
Protein accessionYP_750261 
Protein GI114562748 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATTTTA TGCAAATATC TCAAAAGCTT TTCTTGGCCT TCGTTGGCCT TACCAGTATT 
GTACTTATCG CCACGTTATC GTTAGCGAGG TGGAGTTTTG ACCAAGGTTT TTTAGACTAT
ATCAACGGAT TAGAACAAGA GCGTTTACAG CATTTATCGG ATGAGCTGTT GACACTTTAT
GCTGCTAATC CTGAAGCGCA AACCGCTCCA TCAGTAATGA CAGATCAACA ATCTACACGA
GTGTGGCAAT CGATTAATCA AACAACATTA ACACAAGCCA TTTCGCTTCA CGCTCCATTT
CCAAAAAGAA ATAGACCCGG CGACGGGGCA AGACCGCCAA GACCTGCAGG TGATAATCGG
CCTCCAATGG GACCTGATCG ACGTTTAGGT CCTCCAAGGC AACGGCCACC ATTTTCACCA
CCTTCTGGTC CTCCGACGGG GTTATATTCT GCTGAACAAC AGTTTATTAG CGGCGTTGAT
ATTGGCAATG TGGATAATCG GATTAGCTTA ACCTTGTTAT TCAATGACCA TATTGTGGGC
TATTTATACA GTAGCCCTAT TCGTGAAGTT GAATCTTCTT CAGCTACCGC ATTTTCTCAG
CAACAACGTT GGACCAGTGT CGGGATCGGT TTATTGTGTT TACTGCTTGC AAGTGCAATT
GCTTGGTGGT TATCACGTTT TCTACTGATC CCAGTCAAAC AAGTTATGCT GGGTGTATCG
TATTTATCTC AAGGTAATTA TGATGAACGT TTATCACCTC AGCGTGCAGA TGAGTTGGGG
CAATTAATGG CCAATATTGA TCATCTCGCC ATGACGCTAT CGAAAAACCG CAGTGCTAAA
AATCGTTGGT TAGCTGATAT TTCTCATGAA CTGCGCACGC CATTGAGTAT TTTATGTGGT
GAGATTGATG CGATTAAAGC AGGGATCAGA ACGTTCGATA GCACTCAGCT TAACTCACTT
GAACAAGAAG TGCTGCGTAT GAAGCACTTA GTCGATGATT TGTATGAACT GTCTTTATCT
GATGTTGGTG GCTTACGTTA TCATTTCCAA CGAGTGAACG TCAGTGAGTC ATTACAGAGC
ACGCTTAACA GTATGGCTAC CAGCCTAGAA GAGAAAGGCC TAACACTACA AAGTCAGTTC
CAGCCTGAGG TGTATTTATC TGCCGATGTA CTTCGTCTTG AACAGCTATT TATTAATTTA
CTAATGAATT CTATGGCTTA CACAGACAGT CCTGGGGTAA TTGATGTGCG ATTGTCACAA
CAAGCTAAAA CAGTAATATT AACCATCAAT GATACTAAGC CCAGTGCCAG CATTGAAGAG
TGTGAACACT TGTTTGAGCC ATTATACCGT CAAGACAGTG CCCGCACACG TCGTGGTAGT
GGTGCTGGTC TTGGTTTAAC CATCTGTAAG AATATTGTCG AAGCGCATGA TGGCACCATT
AAGGCCATCC CATCACCATT GGGTGGGCTT TGTATTGAAG TACAATTACC TATGCACAGG
GAATGA
 
Protein sequence
MYFMQISQKL FLAFVGLTSI VLIATLSLAR WSFDQGFLDY INGLEQERLQ HLSDELLTLY 
AANPEAQTAP SVMTDQQSTR VWQSINQTTL TQAISLHAPF PKRNRPGDGA RPPRPAGDNR
PPMGPDRRLG PPRQRPPFSP PSGPPTGLYS AEQQFISGVD IGNVDNRISL TLLFNDHIVG
YLYSSPIREV ESSSATAFSQ QQRWTSVGIG LLCLLLASAI AWWLSRFLLI PVKQVMLGVS
YLSQGNYDER LSPQRADELG QLMANIDHLA MTLSKNRSAK NRWLADISHE LRTPLSILCG
EIDAIKAGIR TFDSTQLNSL EQEVLRMKHL VDDLYELSLS DVGGLRYHFQ RVNVSESLQS
TLNSMATSLE EKGLTLQSQF QPEVYLSADV LRLEQLFINL LMNSMAYTDS PGVIDVRLSQ
QAKTVILTIN DTKPSASIEE CEHLFEPLYR QDSARTRRGS GAGLGLTICK NIVEAHDGTI
KAIPSPLGGL CIEVQLPMHR E