| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1569 |
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| Symbol | |
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| ID | 4277805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1870900 |
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| End bp | 1873419 |
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| Gene Length | 2520 bp |
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| Protein Length | 839 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638134354 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_750258 |
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| Protein GI | 114562745 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.1217 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTAAAA AAGCTATTTC TCAAGTGCAA CTAAGAGAAT GGCAGCTAGA AATAAATGAT
ATTTCTGCCG AGTTTCGTCT TACCATTATG TTTTACCAGA TCAATGCTGA AAACAGTATT
GAAGCTATTT GTACAAGCCA GGGTATTGAT GATCATACTC AGCGACAGCA TCAAGAGAGC
TTGTTACAAC ATCTTAAATC GGCAGACGCT CATAGTGTCA AAAAGGTAGA TCAACACTTT
ACTGTTTATC ATCAGCCAAT TCGTTCATCA AAAGGTCAAA TCATCGGTGT GATCACTTTT
AGCGACAAAG CTAACGCACC GTCTGAACAA GGATTATTTC AACCCTTGTC GGCAATGCAA
ACACGCATTG CGGATATGTT AAGTAATGCC ATTCGTTATT ATATAAACTC CTTAACCATT
GATTCTAATG CCTCCGAGCC TGTGTCGCTC GATGTTGATT TACAGTCATT TATTGATGCC
TTTGAAGAGC ATATGTGGGT TAAAGATGCT AACGGCCACT ATGTTGCATG TAATAAAAGT
GTTGAACGAG CTTGGCGTAA ATCTACAGAA CAAATTGTTG GCAAAACTGA CTTTGACCTT
TTTGATCCGC GCACCGCAAA TGAATTTATT GCGAGTGATA AATTAGCCAT CAGTAACGGT
TCGACTGTAG TGGTGTCTGA ATGTGAAGAA GTTGATGTCA ATTTTAATAA AGTCTGGCTC
GAAACCATCA AAGCGCCCAT TTATAATACC CAAGGTCAAT TGACCGGGGT TATAGGTATG
ACACGTAACA TTGCTAAACA CAAAGAAGCG CAGGATCAAC TCATTTTAGC TGCCAATGTG
TTTCAAAATG CAGTCGAAGG GGTAGTTATA ACCGATAGTA ATGGCAATAT TACCGAGATT
AACCAAGCAT TTACCGACAT TACTGGTTAC AGTCGCGAAG AGGTTATAGG CCAAAATCCT
AGAATGCTGA GTTCAGGACG CCATCCTAAA AGTTTTTTTG AACGATTGTG GAATACCTTA
TTAGTTCAGG GGAAGTGGCA CGGTGAAATT TGGAATCGTC GTAAGCATGG TGCTATTTTT
CCGCAAGCGA TAACCATCAG TGCAGTATTC GATAAGCTCA ATATCATTCA GTATTATGTT
GCTGTTTTTG CTGATATTTC AGCGCAAAAA CAAAATGAAG AAAAACTGAA AAATTTAGCT
TATTTTGATC CGTTGACACA ATTGCCTAAT CGGATGCAAT TTATGTCACT GTTAGAGCAA
GAGGTGAACC ACTCTCATCG GGCTAAAAAG CAGCTGGCTA TTGTGTTCTT AGATATCGAT
TTCTTTAAGC ACATTAACGA CAGTTTAGGC CATGTTATTG GCGACGAAAT TCTCGTTGAA
TTGGCTAAAC GCTTATCTTA CGCTTTATCT GATTTTGACG TATTAGCACG TTTAAGTGGT
GATGAGTTTG TGGTCATGTT GCCGAGCATA ATGGGAACTG ATTCTGTAAC GTCATCGGTT
GACCGTATTC GCAGTGTATT TGAACGCCCA TTTATATTGG ATAATACCCA ATCAGTGCGT
CTTACCGCCA GCATGGGAGT GGCGATATAC CCAAGTGATG GTGATGATCA CGACAGCTTA
TTACGTAATG CCGACGCGGC TATGCATCGT GCCAAGTTAG ATGGGCGAAA TAATTATGCC
TTTTATACCG AGTCGATGAC CAAGCAAGCT GTAGCACAAT TAAAGCTGCA AAATGCATTA
CATCAAGCAT TGGTTAATGA AGATTTTTAT CTCGTTTATC AGCCTAAGTT GAAACTGTCT
GATTTATCAC CAAGTGGCTT TGAAGCGTTA ATTCGTTGGT CAGATCCTGT CTACGGCAAT
ATCTCTCCTG CAGAGTTTAT TCCATTAGCA GAGAAGATTG GTTTGATTTG GGATATTGGT
TTATGGGTTT TAAAGGCCGC TTGTTTACAA GGGGTGGAAT GGCTAACTCA AGGTAAAATG
TTTGAACGTA TTTCGGTCAA TGTGGCCAGC TTACAGCTGA AAAGAAATGA TTTTGTCGAT
AAAGTGCGCT CGATTTTATT GGAAACCGGA TTACCAGCCA AACATTTGGA ATTAGAAGTC
ACCGAGTCTT GCATGATGAA TGATCCAGAC GCGATTATTC GTGATTTGAA ATTGCTTGGC
GCCATGGGCA TTGCTTTGAG TATTGACGAT TTTGGTACAG GGTACTCATC TCTCAATTAT
CTCAAAAAGT TACCGATTGA TAAGTTGAAA ATCGATCAAT CTTTTGTCCG TGATATTCCT
CATGATGTGA ATAATACAGC GATTGCGAAA GCGGTTATTG CATTGGGACA TGCATTGAAT
TTGCAGATTA TTGCTGAAGG TGTTGAAACC GTCGATCAAG CAGATTTTCT GCGGCTCAAT
GGTTGTGATT TGGTTCAAGG GTATTTGTAC AGCAAACCGC GATTGCCAGA CGAGCTTAAT
GAGTTTTTAC CGATGTTCCG TAACAACAAT AACATAGTCA ATGAGATTAA AGTAAAGTAA
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| Protein sequence | MLKKAISQVQ LREWQLEIND ISAEFRLTIM FYQINAENSI EAICTSQGID DHTQRQHQES
LLQHLKSADA HSVKKVDQHF TVYHQPIRSS KGQIIGVITF SDKANAPSEQ GLFQPLSAMQ
TRIADMLSNA IRYYINSLTI DSNASEPVSL DVDLQSFIDA FEEHMWVKDA NGHYVACNKS
VERAWRKSTE QIVGKTDFDL FDPRTANEFI ASDKLAISNG STVVVSECEE VDVNFNKVWL
ETIKAPIYNT QGQLTGVIGM TRNIAKHKEA QDQLILAANV FQNAVEGVVI TDSNGNITEI
NQAFTDITGY SREEVIGQNP RMLSSGRHPK SFFERLWNTL LVQGKWHGEI WNRRKHGAIF
PQAITISAVF DKLNIIQYYV AVFADISAQK QNEEKLKNLA YFDPLTQLPN RMQFMSLLEQ
EVNHSHRAKK QLAIVFLDID FFKHINDSLG HVIGDEILVE LAKRLSYALS DFDVLARLSG
DEFVVMLPSI MGTDSVTSSV DRIRSVFERP FILDNTQSVR LTASMGVAIY PSDGDDHDSL
LRNADAAMHR AKLDGRNNYA FYTESMTKQA VAQLKLQNAL HQALVNEDFY LVYQPKLKLS
DLSPSGFEAL IRWSDPVYGN ISPAEFIPLA EKIGLIWDIG LWVLKAACLQ GVEWLTQGKM
FERISVNVAS LQLKRNDFVD KVRSILLETG LPAKHLELEV TESCMMNDPD AIIRDLKLLG
AMGIALSIDD FGTGYSSLNY LKKLPIDKLK IDQSFVRDIP HDVNNTAIAK AVIALGHALN
LQIIAEGVET VDQADFLRLN GCDLVQGYLY SKPRLPDELN EFLPMFRNNN NIVNEIKVK
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