Gene Sfri_1567 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1567 
Symbol 
ID4277803 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp1868438 
End bp1869145 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content44% 
IMG OID638134352 
Productpeptidase E 
Protein accessionYP_750256 
Protein GI114562743 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3340] Peptidase E 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.136519 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCATTA ATGCATTAAT GTTGAGCGCC TCACGGGTCG GTAATTCGAC ATATCTAAGC 
CATACCGTTG AGCTTATTCG TCCACTCACT CACCCAGGAC AACAATGGTT GTTTATTCCT 
TATGCTGGCG TCAGTGTAAG TTATGATGAG TATTTAACAA AAGTACAAAC AGCGCTTGAA 
CCTCTGCCAA TTACCATTAG TAGCATTCAT CAGTTTGCAG ACCCAAAACA AGCCATTCTA 
GATGCTGCAG GTATTTTTGT TGGTGGCGGC AATACATTCC AATTGCTCAA CGAATTGTAT 
CGCTACGACT TACTGCACTT AATTCGTGAA AAAGTAGAAA ATGGCATGCC GTATGTGGGC 
TGGAGTGCGG GATCAAACAT TACTGGTGCC AGCATTCGTA CCACCAATGA TATGCCAATT 
GTCGAGCCGC CCTCTTTTAC CGCATTGGGT ATATTGCCAT TCCAATTAAA TCCGCATTAC 
ACCAACTACC AAATGCCAGG CCATAATGGT GAAACTCGTG CGCAACGGCT GTTAGAATTT 
ACCATGGTCG ATCCACTGAC ACCGGTGATA GGGATCCAAG AAGGCAGCGC TCTATGGCGC 
CAAGGCGATA AATTACACCT TATTGGTAAT GAGACGGCTT ATTTATTCCA TGGTAAACAA 
CAAGAAGTTG AACTTACCGC TAACACCGAC TTGTCACACT ACCTTTAG
 
Protein sequence
MPINALMLSA SRVGNSTYLS HTVELIRPLT HPGQQWLFIP YAGVSVSYDE YLTKVQTALE 
PLPITISSIH QFADPKQAIL DAAGIFVGGG NTFQLLNELY RYDLLHLIRE KVENGMPYVG 
WSAGSNITGA SIRTTNDMPI VEPPSFTALG ILPFQLNPHY TNYQMPGHNG ETRAQRLLEF 
TMVDPLTPVI GIQEGSALWR QGDKLHLIGN ETAYLFHGKQ QEVELTANTD LSHYL