Gene Sfri_1565 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1565 
Symbol 
ID4277801 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp1867375 
End bp1867815 
Gene Length441 bp 
Protein Length146 aa 
Translation table11 
GC content41% 
IMG OID638134350 
Producttranscriptional regulator, MerR family protein 
Protein accessionYP_750254 
Protein GI114562741 
COG category[K] Transcription 
COG ID[COG0789] Predicted transcriptional regulators 
TIGRFAM ID[TIGR01950] redox-sensitive transcriptional activator SoxR 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.183057 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAATAG ATGTAGAACT AAGTGTTGGC CAAGTCGCCA AACGTTGTGG AATAAACATC 
TCTGCGATTC ACTTTTATGA GCAAAAAGGT CTCATCAGCG GTTGGCGCAA TAATGGTAAT 
CAACGTCGTT ATACACGAGA CGTTATCAGG CGAATATCGC TCATCAAAGC TGCGCAACAA 
TTAGGGATAT CGTTGGATGA TATCAAGCAT GCTTTTGCTG CTTTACCCAA TGAACGAACA 
ACGACTAAAG AAGACTGGGC AGAATTATCA AATGTTTGGA ATAAATCACT TACGCTGCGG 
ATAGCCCAGA TGCAAAAATT GAAAGATTCA CTCGAAGGTT GCATCGGTTG TGGTTGTTTA 
TCGATGAAAA ACTGTCCACT GTATAATCCA AACGATATTC TTGAAGAACA AGGCCCTGGC 
CCAGTGCTTT TGAATAAATG A
 
Protein sequence
MSIDVELSVG QVAKRCGINI SAIHFYEQKG LISGWRNNGN QRRYTRDVIR RISLIKAAQQ 
LGISLDDIKH AFAALPNERT TTKEDWAELS NVWNKSLTLR IAQMQKLKDS LEGCIGCGCL 
SMKNCPLYNP NDILEEQGPG PVLLNK