| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1560 |
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| Symbol | |
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| ID | 4277796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1861166 |
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| End bp | 1862191 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638134345 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_750249 |
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| Protein GI | 114562736 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAACA CTATTAAGAA ACTAATATAT GGTGGCGTTT TAATAATTGT CATCGCAGGG
GCTTGGGCTG TATGGCAGTA TTTTCAAGCA CAACCATTGG GTGCTGGTTT CGCCTCAGGT
AACGGAAGGA TTGAAGCTGT ACAGGTTGAT ATATCAACAA AAATTGCAGG TCGAGTCGAT
ACAATTATGG CGCAGGAGGG CGATCTAGTT CAGGCAGAAC AGATTGTCGC AAAAATCAAT
ACAGATCAAC TGCGAGCTCA GTTAATCGGC GCAGAAGCAA ACGTTGCCAG TGCAGAAAGC
CAAGTCGCAT CCGCTTTGGC AGCCATAGAG CAGGCAAAGG CGGAACAATT ACTGGCTGAA
CAAGAGTTGC ATCGGGCACG CGAGTTGGTA AAAAATAATC ACATCAGTAA GGAAACCTAT
GATACACGAG TAAGTCAGGT AGCCGTTGCC AAAGCCGCCC TTGAGGCTGC TAAAGCTGGA
CTAGTATACC GAGAACGTAT GGTCGATGCT GTGAAGGCTA GCACTACAGA GATCCAGACT
CAAATCGACG ATTGTGTTCT CAAATCACCG GTTATTGGCA GAGTTATTTA TCGACTTGCC
GAACCCGGTG AAGTGCTAGG AAGTGGCGGT AAAGTGCTAA CCGTTGTGAA CCTCGCCGAT
GTCTATATGG AGGTCTTTCT TCCGTCAGCT CAGGCTAATA GCATTGCTAT CGGCGCAGAG
GCTCGAATTA AGCTGGATAT CTTAGATTTC GCTATTCCTG CGTCTGTCAG TTTTGTGTCA
CCGGAATCCC AATTCACACC AAAACAAGTT GAAACACTCA GTGAACGCGA AAAACTCATG
TTTCGTGCCA AAGTACGAAT ACCGCAAAAT TTAGTCCAGA GCCATATTGA TGATGTAAAG
ACAGGGGTTC GCGGGGTTGC TTACATTCGT CTGACCACAA AATCCGGAGA AAAACCTGCT
CCGTGGCCGG ACTTTCTTCA GAAATTACCA CCGCAAGCCG AACCCGTCTC AGTCAATAAT
AACTAA
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| Protein sequence | MNNTIKKLIY GGVLIIVIAG AWAVWQYFQA QPLGAGFASG NGRIEAVQVD ISTKIAGRVD
TIMAQEGDLV QAEQIVAKIN TDQLRAQLIG AEANVASAES QVASALAAIE QAKAEQLLAE
QELHRARELV KNNHISKETY DTRVSQVAVA KAALEAAKAG LVYRERMVDA VKASTTEIQT
QIDDCVLKSP VIGRVIYRLA EPGEVLGSGG KVLTVVNLAD VYMEVFLPSA QANSIAIGAE
ARIKLDILDF AIPASVSFVS PESQFTPKQV ETLSEREKLM FRAKVRIPQN LVQSHIDDVK
TGVRGVAYIR LTTKSGEKPA PWPDFLQKLP PQAEPVSVNN N
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