Gene Sfri_1550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1550 
Symbol 
ID4277786 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1846137 
End bp1847219 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content43% 
IMG OID638134330 
Product3-oxoacyl-(acyl carrier protein) synthase III 
Protein accessionYP_750239 
Protein GI114562726 
COG category[I] Lipid transport and metabolism 
COG ID[COG0332] 3-oxoacyl-[acyl-carrier-protein] synthase III 
TIGRFAM ID[TIGR00747] 3-oxoacyl-(acyl-carrier-protein) synthase III 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.110093 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGTATG CACACATTAC CGGTTGGGGT AAGTCAGTTC CACCCGCAAC ATTGACCAAT 
GACGATTTAG CGACATTCAT GGAAACGACA GATGAATGGA TCAAAACACG TACTGGAATT
AGTAAGCGTA ACATTAGTCA CGTTAATACT TCTGAAATGG CTTCGGTTGC CGCTAAGCAT
GCGCTTGCCG CAGCAGGGAT TGATGGCAGT GAATTAGATT TAATTATTCT AGCCACCGCC
AGCCCTGATA CCTTGATCCC CAATATTGCA TCAACGGTAC AGGCAAATAT TGGTGCTACT
TGTGGTGCAT TTGACATTAA CGCTGCTTGC AGTGGCTTTT TGTATGGTGT TGGCTTGGCC
AGCTCAATGA TTAAGAGCGG CCAAAGTAAG AAGATTCTGA TTATCGGCGC TGAACGTTTA
TCTTTTTATT TGGATTGGTC TCGACGTGAA ACAGCAGTGT TATTTGGTGA CGGCGCTGGT
GCAGTTGTAC TTGAGGCCAG TGACCAACCT GGTGGTGTAT TAGGTTATGA ATTAAATAAC
GATCCTGAAG GTCGCGATAT TTTAAAGTCT AACTTTGGCA CCCAGATGGA TAGATTTGAC
AATGACTCAT TGGATTTTTA CATTCATATC AATGGTCAAG ATGTGTTTAA ACGTGCAATT
CATGGCATGG GAAGTTTAAG TAATAAGGTA TTAGACAACT GTGGTATCAG CATCGACGAT
GTCGACTTTG TTATTCCACA TCAGGCAAAC GAACGTATTA TTGATACGCT AGTTAGCCGA
ATGAAAATTC CAAAAGAAAA AGCCTTCGTC AATATCGCTG ATTATGGCAA TACGTCTGCA
GCGACTATCC CGATTGCGAT TTGCGATGCG TTATCTCAAG GTAGAATTGA AGCCAATCAG
ACTATTCTGT CTTGCGCGTT TGGTGCTGGA TTAACCTCAG CGGCCTTACT GCTAAAATGG
GGCGAACGCA CCACGCCAAT TAACACCAGT GATGCTGCAT TACCGCCTTG CGATAAAACC
GCACTTGAAT TGATTAAACC TGCAGTTGAT TATTTTTTCA ATAAAGCTAA AAACGCAGAA
TAA
 
Protein sequence
MQYAHITGWG KSVPPATLTN DDLATFMETT DEWIKTRTGI SKRNISHVNT SEMASVAAKH 
ALAAAGIDGS ELDLIILATA SPDTLIPNIA STVQANIGAT CGAFDINAAC SGFLYGVGLA
SSMIKSGQSK KILIIGAERL SFYLDWSRRE TAVLFGDGAG AVVLEASDQP GGVLGYELNN
DPEGRDILKS NFGTQMDRFD NDSLDFYIHI NGQDVFKRAI HGMGSLSNKV LDNCGISIDD
VDFVIPHQAN ERIIDTLVSR MKIPKEKAFV NIADYGNTSA ATIPIAICDA LSQGRIEANQ
TILSCAFGAG LTSAALLLKW GERTTPINTS DAALPPCDKT ALELIKPAVD YFFNKAKNAE