| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1547 |
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| Symbol | |
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| ID | 4277783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1841697 |
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| End bp | 1843415 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134327 |
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| Product | Na+/solute symporter |
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| Protein accession | YP_750236 |
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| Protein GI | 114562723 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGTTC AAACACTAAC ATATTTAATT GTCGGCGCGA CTTTTGCGCT GTACATCGGG
ATCGCCATTT GGTCTCGAGC GGGTTCAACT AAAGAGTTTT ATGTAGCAGG TGGTGGCGTT
CACCCTGTTC TAAATGGTAT GGCAACTGCA GCGGACTGGA TGTCAGCAGC ATCGTTTATT
TCATTAGCCG GTATTGTGTC TTTTACCGGT TATGATGGCT CAGTTTACCT TATGGGTTGG
ACTGGCGGTT ATGTGCTATT AGCCTTATGT ATGGCACCTT ATTTACGTAA ATTTGGTAAG
TTTACGGTTC CAGACTTTAT TGGTGATCGT TACTACTCTC AGACTGCACG AACTGTCGCA
GTTATTTGTG CCATCTTTAT TTGTTTTACT TACATTGCAG GGCAAATGCG TGGTGTTGGC
GTAGTGTTCT CTCGTTTCTT AGAAGTTGAC GTAGAAACCG GTGTGTATAT TGGTATGGCA
GTGGTGTTCT TTTATGCTGT ATTAGGTGGC ATGAAAGGGA TTACTTACAC ACAGGTAGCA
CAATACTGCG TACTTATTTT TGCCTTTATG GTTCCTGCTA TCTTTATATC AGTAATGATG
ACAGGTCATA TTTTACCGCA AATCGGTTTT GGTGCTGAGT TAATCGATGC TGCAGGTAAT
GGTACGGGGG TGTATTTACT CGATAAGCTC GATGGATTAT CGGCAGAACT CGGGTTCTCC
CAATATACCG AAGGCTCAAA ATCGATGATT GATGTGTTCT TCATTACTGG TGCATTAATG
TTCGGTACAG CGGGCTTACC ACATGTGATT GTACGTTTCT TTACTGTTCC TAAAGTAAAA
GATGCACGTA TTTCTGCGGG CTGGGCATTA GTGTTCATCG CTATTATGTA TACTACTATT
CCTGCATTAT CTGCTTTCTC TCGCGTTAAT ATGATTGAAA CCATCAATGG ACCAGAATCA
ACTGGCGTGC CTTATGAAAC AGCGCCAACG TGGATTAAAA ACTGGGAAAA AACCGGTTTA
ATTACATGGG ATGATAAGAA CAACGATGGC AAGATTTTTT ACACCAATGG TGAAAAAAAT
GAGATGAACA TTGACCGAGA TATTATGGTT CTTGCCACGC CTGAAATTGC TAATCTTCCA
GCATGGGTTA TTGCATTAGT TGCCGCGGGT GGTTTAGCCG CAGCCTTGTC TACCTCTGCA
GGTTTATTAC TGGTAATTTC AACATCTGTG TCGCACGATT TACTCAAGAA AAATCTAATG
CCGGATATTT CGGATAAGAA AGAGTTAATG TATGCACGAA TAGCCGCTGG TTTCGGGGTT
GTTATGGCGG GTTACTTTGG TATTAATCCA CCTGGATTCG TAGCAGCGGT GGTGGCCATT
GCATTTGGTC TGGCAGCAGC GTCGTTATTT CCGGCTATTA TCATGGGTAT TTTCTCTAGA
ACTATGAATA GAGAAGGTGC TATTTCGGGC ATGGTGATTG GCTTATTATT TACTGCTAGT
TATATTGCCT ACTTCAAGTT TATCAATCCG GCGGCTAATT CATCTGAAAA TTGGTTATTT
GGTATTTCAC CTGAAGGTAT TGGTATGGTG GGAATGATGG TTAACTTTGG TGTCGCTTTT
GCTGTCAGTA AAGTCACCGC TAAAATCCCT GACGAAATAG TCGCAATGGT TGAGTCAATT
CGTTTCCCTA AAGGGTCAGG CGAAGCACAC GATCATTAA
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| Protein sequence | MDVQTLTYLI VGATFALYIG IAIWSRAGST KEFYVAGGGV HPVLNGMATA ADWMSAASFI
SLAGIVSFTG YDGSVYLMGW TGGYVLLALC MAPYLRKFGK FTVPDFIGDR YYSQTARTVA
VICAIFICFT YIAGQMRGVG VVFSRFLEVD VETGVYIGMA VVFFYAVLGG MKGITYTQVA
QYCVLIFAFM VPAIFISVMM TGHILPQIGF GAELIDAAGN GTGVYLLDKL DGLSAELGFS
QYTEGSKSMI DVFFITGALM FGTAGLPHVI VRFFTVPKVK DARISAGWAL VFIAIMYTTI
PALSAFSRVN MIETINGPES TGVPYETAPT WIKNWEKTGL ITWDDKNNDG KIFYTNGEKN
EMNIDRDIMV LATPEIANLP AWVIALVAAG GLAAALSTSA GLLLVISTSV SHDLLKKNLM
PDISDKKELM YARIAAGFGV VMAGYFGINP PGFVAAVVAI AFGLAAASLF PAIIMGIFSR
TMNREGAISG MVIGLLFTAS YIAYFKFINP AANSSENWLF GISPEGIGMV GMMVNFGVAF
AVSKVTAKIP DEIVAMVESI RFPKGSGEAH DH
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