| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1545 |
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| Symbol | |
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| ID | 4277781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1838889 |
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| End bp | 1840994 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638134325 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_750234 |
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| Protein GI | 114562721 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.58352 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCTCATCA ATTGTTACCC AATACAATTT TTTGCCAATG TGCAATTTGT ATTAGGTAAC
ACGGTGACTG TCATTGCTGC GGTTTTATTG GGACCTTGGT ATGCATTTCT AACCGCTATG
ATGGCATCAA CTGGATTAAT GTTGATATGG GATAGCCCAC ATGTGTATTT GTTTTTTGGG
CTTGAAGCAT TATTTTTAGG TTATGCCAGA CGCCGTGATA TCTATGCTTT ATATGCTGAT
GCAGCATATT GGTTATTTAT TGGTGCACCA ATGGTATATT TATATGTGGT GCTATTGATG
GACATTCCCC CCTCTCACTT AGGCTTTATT ATTTCAAAGC AAGGCATCAA CGGACTGATT
TATACCAGTA TTGCATCACT ACTGATTTTA GCGATACCAA AGTTATGGTT TTTAAAAGAC
AAAGTTAAAG ACCGCCATCG TAGACAATTA AGTTCACAAC TGACCTATTT CTTCACCTTA
ATGGTGACCT TAACGTTATT GTTTTCGGCG TTAATCTTTA ATTTTTATTT TTTAGAACGT
CAACAAATCA TGTTAAAACA AAACATGACT GAAGCGGTTG CCCACCTTTC GACCTCAGCA
CAGAATTACA TTGAAAACCA TAAAACCGTC ATTCAAAATA CTGCAAGCCA ATTAGACTTA
GTTGCAGATA CGCCTGAAAA ATGGCAAGAC ATTTTATCGA GTTCACATCA AAACTATTCT
GGTTTTATCA GCATGTTGAT TGCTAATCCG ACAGCCAATA TTGTCGCTGC TAGTCCAGTA
TCAAGACTCA TGACAAAGCA AATATCTGAA CAAAGCGTCA ACATTAAAGA CAGAGATTAT
TTTATTGAGT CATTCTATAA TCAGCGCCTA TTCGTATCAT CTGTCTTTCT CGGTCGCGGA
TTTGGAAATG ACGCAATTAT TGCTATGAGT GCGCCCTTTT ATCTCGATGA GCAACACACA
CAAGTTGCAG GAATCGTAGA AGGGTCACTT GATCTGACCC ACTTTGCACA TATTGACCAA
GTTAATGAAT ATACCGACGA TGAATCTATA GTGATGGTTG ATGAACAAAA TCAAATAATT
TACGCATCAA CAAAACTCAA CTTGAAACCA CTCTCACAAT TTAATTTTGC AATAAATAAA
GGCGTATATC GAGCCAATCT TGAATTAATC AATATTCATA ATACGACCTC AATTGTGCCT
GAATACATGT ATGCTCACCG GGAACTCGAT AATGGTTGGA CCGTGTATAT TTTAAAAGAA
TTTTCGCCGT TACTAAAACT CGCTGAAGAA CAAATGTTCA GTAGCTTTAT CATGCTGTTG
ATTGCATTGT TGTGTACCTT CTATATTTCA AAGAAGCTCA GCGCGTTGCT AACGGTGCCA
TTAGAAGCTG TCGCCAATCA ATTCAGTCAG TCATATTCAG ATCCAGCAAA AACATCGGCA
ATTGACGATA GCTCACCAAG AGAGGTATTC AGTCTGTACC AACGGTTAGC AGCCAGTAAA
CAACAACTCA TCGCGCATCA AGTCGAATTA GAAGAAACAG TTGCTCATCG TACGGCGGAA
TTAGAAAAGG CCAACAAAAA ACTCACAGAA CTGGTTGATA GAGATCCGTT AACCGGCTTA
TATAATCGCC GTTATGCTGA ACGTAAATTT GGTGAGTTAG TGGATTTTTG TTTGCGAAGC
GATCAGGCCA TTACTGTTGT ATTGCTTGAT TTAGACTTCT TCAAAAAAGT GAATGACAAC
TATGGCCATT TAGCTGGTGA TGAGTGCTTA CGCAACGTGT CACAATTATT ACAGAAATAC
TTTAAACGAG ACATTGATAT TGTGGCCCGC TACGGCGGAG AAGAGTTTTT GCTTATTCTG
CCTTTGTCCA ATACCTTACA TATTGAACAT CATCTCAATG GTTTTAGAGA GGCACTGTCG
CAATTAGACA TCATATCACC TGAAGATAAA CAGTCATTTA ACGTGACGGT CAGTATTGGT
GCTATTACGG CAAGTGCTGA TTATGAAGTA GAACTGGATA AATGGATTAA AGTCGCTGAT
GATAACCTCT ATCAGGCAAA GCAACAGGGA CGTAATCGAA CAATCATTAA CATCATTAAT
GACTAA
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| Protein sequence | MLINCYPIQF FANVQFVLGN TVTVIAAVLL GPWYAFLTAM MASTGLMLIW DSPHVYLFFG
LEALFLGYAR RRDIYALYAD AAYWLFIGAP MVYLYVVLLM DIPPSHLGFI ISKQGINGLI
YTSIASLLIL AIPKLWFLKD KVKDRHRRQL SSQLTYFFTL MVTLTLLFSA LIFNFYFLER
QQIMLKQNMT EAVAHLSTSA QNYIENHKTV IQNTASQLDL VADTPEKWQD ILSSSHQNYS
GFISMLIANP TANIVAASPV SRLMTKQISE QSVNIKDRDY FIESFYNQRL FVSSVFLGRG
FGNDAIIAMS APFYLDEQHT QVAGIVEGSL DLTHFAHIDQ VNEYTDDESI VMVDEQNQII
YASTKLNLKP LSQFNFAINK GVYRANLELI NIHNTTSIVP EYMYAHRELD NGWTVYILKE
FSPLLKLAEE QMFSSFIMLL IALLCTFYIS KKLSALLTVP LEAVANQFSQ SYSDPAKTSA
IDDSSPREVF SLYQRLAASK QQLIAHQVEL EETVAHRTAE LEKANKKLTE LVDRDPLTGL
YNRRYAERKF GELVDFCLRS DQAITVVLLD LDFFKKVNDN YGHLAGDECL RNVSQLLQKY
FKRDIDIVAR YGGEEFLLIL PLSNTLHIEH HLNGFREALS QLDIISPEDK QSFNVTVSIG
AITASADYEV ELDKWIKVAD DNLYQAKQQG RNRTIINIIN D
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