Gene Sfri_1538 details

Gene Information

• Locus tag: Sfri_1538
• ID: 4277774
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 1830256
• End bp: 1832169
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 638134318
• Product: heat shock protein 90
• Protein accession: YP_750227
• Protein GI: 114562714
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0326] Molecular chaperone, HSP90 family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0309955
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACAAC AAGAAACTCA TGGCTTTCAA ACCGAAGTAA AACAACTTCT GCAATTGATG 
ATCCACTCTC TGTATTCGAA TAAAGAGATT TTCTTACGTG AGCTAGTCTC AAATGCGGCC 
GATGCAGCAG ATAAGCTTCG CTATTTAGCA TTAACTGACG ATACCTTATA TGAAGGTAAC 
GGTGATTTAC GCGTTCGTGT TAGTGCGAAT AAAGAGAAGG GTACCGTAAC CATTTCAGAT 
AATGGTATTG GCATGACCCG CGATAGCGTT ATCGAACATT TAGGGACTAT TGCCAAGTCT 
GGCACCAAAG AATTTTTTAG TAATCTTTCT GGTGAAGCGT CAAAAGATTC ACAACTCATT 
GGTCAGTTTG GTGTGGGCTT CTATTCGGCT TTCATCGTAG CGAAAAAAGT TACTGTACGC 
ACTCGTGCTG CCGGCCATGC TGCTAACGAA GGTGTATTGT GGGAATCTGA AGGCGAAGGT 
TCATTCAATG TAGAAAGTAT CACTAAAAAT GAACGTGGTA CTGAAATTGT GCTGCATTTA 
CGTGACGAAG AAACTGAGTT TGCTGACGAT TACCGTTTAC GCTCAATTAT CACTAAGTAT 
TCTGATCATA TCTCTGTTCC AGTACAAATG TGGAATGAAG GTACGCCTGA GTCAGACGGC 
CCTGATGGCG AGAAAGTCGC GGCAACGGAA GGTGAATGGA AAGTGATGAA CAAAGCGACA 
GCGCTTTGGA CTCGTAATAA GTCAGACATC ACTGAAGAAG AATACCAAGA GTTTTACAAG 
CATATTTCTC ACGATTACAG CGACGCATTA AAATGGTCTC ACAATCGTGT TGAAGGTAAA 
CAAGAATACA CCAGTTTACT GTACATCCCA GCCAAAGCAC CTTGGGATAT GTGGAACCGC 
GACCATAAGC ATGGCTTGAA ACTGTTTGTT CAACGTGTAT TTATTATGGA TGAAGCGGAA 
CAGTTTCTAC CTACATACTT GCGCTTTGTT CGTGGATTAA TCGATTCAAA TGATTTGCCA 
TTAAACGTAT CTCGCGAAAT CTTACAAGAT AACCAAGTAA CAACTGCAAT GCGCGTGGGC 
ATCACCAAGC GTGTATTAGG TATGCTGGAA AAGCTGGCTA AAGATGAGCC AGAACAGTAT 
CAATCTTTCT GGGCTGAATT TGGTCAAGTA TTAAAAGAAG GCCCTGCAGA AGACTTTGCT 
AACAAAGAAC GCATTGCAGG CTTATTGCGT TTTGCTTCTA CTCATGACAA CTCTGCCGCA 
ACAACAGTGT CATTAGAGGC CTATATTGAG CGCATGAAAG CGGGTCAAGA CAAGATTTAT 
TATATCGTTG CTGACAGTCA TGAAGCAGCT GCAAATAGTC CTCATCTTGA GTTGCTGCGT 
AAAAAAGGCA TCGAAGTATT GTTATTGTCT GAGCGTATCG ACGAGTGGTT GGTTAATCAC 
TTAACTGAGT TCAAAGACAA GAAGCTACAT TCAGTGACAC GTGGTGATTT AGAGTTAGGT 
GAACTTGAAG ATGCCGCTGA TAAAGAAGCG CATGACAAAG TTGCCGAAGA GTCTAAAGGT 
TTAATTGAGC GTGTTAAAGC TGCGTTAGCA GACAGCGTTT CTGAGGTTCG TGTTACTTCA 
CGTCTAACGG ACACGCCAGC GTGTGTGGTC GCGGGTGAAG GTGAAATGTC GACGCAGATG 
ATTAAACTAA TGCAAGCTGC TGGTCAGCCT GTGCCAGAGT CTAAGCCAAC ATTTGAGATT 
AACCCAACGC ATCCTTTGGT TGAGCATCTG AATAATGAAA CTGACGAGCA ATTGTTTGCT 
GATTGGGCTA ACTTGTTATT ACAACAGGCC TTGCTATCTG AGAAAGGCAG TTTGGCAGAC 
CCTTCAGCGT TTATTAAACT CACCAATCAG ATGTTATTGG CGAGTGTAAA GTAA 

 

Protein sequence

MSQQETHGFQ TEVKQLLQLM IHSLYSNKEI FLRELVSNAA DAADKLRYLA LTDDTLYEGN 
GDLRVRVSAN KEKGTVTISD NGIGMTRDSV IEHLGTIAKS GTKEFFSNLS GEASKDSQLI 
GQFGVGFYSA FIVAKKVTVR TRAAGHAANE GVLWESEGEG SFNVESITKN ERGTEIVLHL 
RDEETEFADD YRLRSIITKY SDHISVPVQM WNEGTPESDG PDGEKVAATE GEWKVMNKAT 
ALWTRNKSDI TEEEYQEFYK HISHDYSDAL KWSHNRVEGK QEYTSLLYIP AKAPWDMWNR 
DHKHGLKLFV QRVFIMDEAE QFLPTYLRFV RGLIDSNDLP LNVSREILQD NQVTTAMRVG 
ITKRVLGMLE KLAKDEPEQY QSFWAEFGQV LKEGPAEDFA NKERIAGLLR FASTHDNSAA 
TTVSLEAYIE RMKAGQDKIY YIVADSHEAA ANSPHLELLR KKGIEVLLLS ERIDEWLVNH 
LTEFKDKKLH SVTRGDLELG ELEDAADKEA HDKVAEESKG LIERVKAALA DSVSEVRVTS 
RLTDTPACVV AGEGEMSTQM IKLMQAAGQP VPESKPTFEI NPTHPLVEHL NNETDEQLFA 
DWANLLLQQA LLSEKGSLAD PSAFIKLTNQ MLLASVK