| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1479 |
|---|
| Symbol | |
|---|
| ID | 4277575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 1768204 |
|---|
| End bp | 1769229 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638134260 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_750169 |
|---|
| Protein GI | 114562656 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAACA CACTACTGCA AACCGCTGCA GCCAATTTGA AAAAAGCTGT TCCGTTAATG
TTAAAATATA GAATACCCAC AACGCCAACA AACTACGCGC TTTGGTATGC TTACGTGGGT
GAACAAAACC CGTTACTCAA TCAAGAATTA GATACAGCAG TCAAACAACA TCAAACCTGT
TCACCTGTGA CCAGCGAATT ATTATATCGT AAACATGTGG CTGACCCGGT TGAGCTTGAT
GTGCGAGACA TGCGTAAAAA TCTTGATGCG ATGGTATGTG AATTATCTCA GTCACTCAAA
GATACTAATT TGGACACTGA GACATTTCAA AATCAAATTG ATAAAGATTT TAAGAAATTA
AGCGACCTCG AAAATCAAGG TTTCTCGTTA GAGCAAGTGA TTGGTATTGT AAGAAATATC
GTTAAAGAAT CTTCCAGCAT CCGTTCTAGC ACCGTGAGTT TTACCGAACA ACTCCAAAAA
GCTCAATCAG AAATCGATAC TCTCAAAACT CGTTTAGCTG AATCTGAAAA AGACATGCTA
TTTGACGCCC TAACCAATGT GTTAAATCGC CGTGCATTTA ACACTGACAT TGAAGCGCAA
ATTGGCTCAG CTCCTGCGGG TACCTGCATG ATTTTAATTG ATATTGATCA CTTTAAAACC
TTCAACGATA ATTTTGGCCA TCAACTTGGC GATTTAGTCC TAAAAACCGT TGCGAAGCGT
ATCCAAGAAG CCTGTCGTGA CGGCATTAAA CTGTATCGTT TTGGTGGTGA AGAGTTCGCT
ATTATTGTAC CAAGTAGTCA GTTTAGAGTT GCCAGACAAT TAGCTGAAGG CATTCGCAGA
GCGCTCGAAA AACTCAGCGT CAAAGACAGA CGCAGTGACA AAGTTATTGA CTCAATAACT
GCATCTTTTG GTGTTGCTGA ATGGAAAGCT AAACAAAGTG TATCTCAATT AATTGAAGCA
ACTGATAAGT TACTGTACGA AGCAAAACGC CTCGGTCGTA ATAGAGTGAT GCCAATCGCA
AACTAA
|
|---|
| Protein sequence | MSNTLLQTAA ANLKKAVPLM LKYRIPTTPT NYALWYAYVG EQNPLLNQEL DTAVKQHQTC
SPVTSELLYR KHVADPVELD VRDMRKNLDA MVCELSQSLK DTNLDTETFQ NQIDKDFKKL
SDLENQGFSL EQVIGIVRNI VKESSSIRSS TVSFTEQLQK AQSEIDTLKT RLAESEKDML
FDALTNVLNR RAFNTDIEAQ IGSAPAGTCM ILIDIDHFKT FNDNFGHQLG DLVLKTVAKR
IQEACRDGIK LYRFGGEEFA IIVPSSQFRV ARQLAEGIRR ALEKLSVKDR RSDKVIDSIT
ASFGVAEWKA KQSVSQLIEA TDKLLYEAKR LGRNRVMPIA N
|
|---|
| |